MD03G1085700.v1.1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000208
Physical Location & Seq
Reverse (-)
6971527 .. 6984650
13124 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1085700.v1.1.491

Sequence Viewer

Length: 795 bp
ATGAACAGAAGAGACAGAAGATGGTCGCTTGAGGGAATGACAGCTCTTGTCACTGGTGGAACCAAAGGAATTGGGTATGCTATAGTGGAGGAATTGGCAGGGCTAGGTGCAATTGTGCATACTTGTGCCCGAACTGAAGCTGACCTCAATGACTGCCTGAGTCAATGGGAGAAGAAGGGTTTTCAAGTTACTGGTTCAGTCTGTGATGTGGTGTCCAAAACCCAAAGAGAGGAACTTATAAACAAGGTCTCATCACTCTTTGATGGGAAACTTAACATCCTTATAAACAATGTGGGGGCTAACAGACCAAAAGCAACACTAGAGTACACAGCTGAAGATTACTCATTCTTAATGAGCACCAATCTTGAATCTGCTTACCATTTGTGCCAACTTTCACATCCTCTGCTCAAAGCTTCAGGATCTGCTAACATCGTTTTGTTGTCCTCCATTGCTGGTGTGGTCTCACTAAATATTGGAACTATATATTCTGCAACTAAAGGTGCAATCAATCAATTAGCAAGAAACTTGGCATGTGAGTGGGCAAAAGATAACATAAGGACTAACAGTGTTGCACCTTGGTTCATCGCCACTCCCCTCGGTGATATGTTTCTCGGAAAGGAAAAGGCATTGGAGATGATAAACTCTCGGTGCCCTTTAGGACGTCCTGGGGAGCCAGAGGAGGTGTCTTCGCTTGTAGCATTTCTATGCCTGCCTGCAGCTTCTTATATTACTGGGCAAACTATTCTCGTCGACGGCGGGGTGAGTGTCAATGGCGTGCTCTTCCAAGGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

265

Amino Acids

28.33

Weight (kDa)

5.97

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 14 - 199 8.8e-46 short chain dehydrogenase
KR PF08659 14 - 175 2.4e-13 KR domain
adh_short_C2 PF13561 22 - 255 6.8e-55 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 239, 284
AatII GACGTC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 750
AciI CCGC 1 cut(s) 756
AclWI GGATC 1 cut(s) 427
AcuI CTGAAG 3 cut(s) 156, 354, 399
AcyI GRCGYC 1 cut(s) 661
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 185, 368
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 5 cut(s) 44, 140, 332, 413, 719
AluI AGCT 5 cut(s) 44, 140, 332, 413, 719
Alw21I GWGCWC 2 cut(s) 359, 780
Alw26I GTCTC 3 cut(s) 6, 253, 466
AlwI GGATC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 716
AsuHPI GGTGA 2 cut(s) 611, 772
BaeGI GKGCMC 2 cut(s) 130, 653
BanI GGYRCC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 2 cut(s) 359, 780
BbvI GCAGC 1 cut(s) 728
BccI CCATC 2 cut(s) 15, 257
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 3 cut(s) 6, 253, 466
BfaI CTAG 2 cut(s) 104, 320
BfmI CTRYAG 2 cut(s) 81, 714
BisI GCNGC 1 cut(s) 717
BlsI GCNGC 1 cut(s) 718
Bme1390I CCNGG 1 cut(s) 666
BmiI GGNNCC 3 cut(s) 61, 650, 672
BmrFI CCNGG 1 cut(s) 666
BmrI ACTGGG 1 cut(s) 741
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 661
BsaI GGTCTC 2 cut(s) 253, 466
BsaJI CCNNGG 4 cut(s) 575, 595, 665, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 58, 196, 736
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 4 cut(s) 575, 595, 665, 784
BseGI GGATG 2 cut(s) 276, 397
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 3 cut(s) 58, 196, 736
BseRI GAGGAG 1 cut(s) 692
BseSI GKGCMC 2 cut(s) 130, 653
BseXI GCAGC 1 cut(s) 728
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 359, 780
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 3 cut(s) 6, 253, 466
Bso31I GGTCTC 2 cut(s) 253, 466
Bsp1286I GDGCHC 4 cut(s) 130, 359, 653, 780
Bsp143I GATC 1 cut(s) 419
BspACI CCGC 1 cut(s) 756
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 61, 650, 672
BspMAI CTGCAG 1 cut(s) 718
BspPI GGATC 1 cut(s) 427
BspQI GCTCTTC 1 cut(s) 785
BspT107I GGYRCC 1 cut(s) 648
BspTNI GGTCTC 2 cut(s) 253, 466
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 3 cut(s) 58, 196, 736
BssECI CCNNGG 4 cut(s) 575, 595, 665, 784
BssMI GATC 1 cut(s) 419
BssNI GRCGYC 1 cut(s) 661
BssT1I CCWWGG 2 cut(s) 575, 784
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 4, 785
BstACI GRCGYC 1 cut(s) 661
BstC8I GCNNGC 3 cut(s) 710, 714, 776
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 276, 397
BstKTI GATC 1 cut(s) 422
BstMAI GTCTC 3 cut(s) 6, 253, 466
BstMBI GATC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 2 cut(s) 81, 714
BstSLI GKGCMC 2 cut(s) 130, 653
BstV1I GCAGC 1 cut(s) 728
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BtgZI GCGATG 1 cut(s) 568
BtsCI GGATG 2 cut(s) 276, 397
BtsIMutI CAGTG 2 cut(s) 51, 571
Cac8I GCNNGC 3 cut(s) 710, 714, 776
CaiI CAGNNNCTG 1 cut(s) 422
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 531
CviJI RGCY 8 cut(s) 44, 103, 140, 299, 332, 413, 673, 719
CviKI_1 RGCY 8 cut(s) 44, 103, 140, 299, 332, 413, 673, 719
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 158
DpnI GATC 1 cut(s) 421
DpnII GATC 1 cut(s) 419
Eam1104I CTCTTC 2 cut(s) 4, 785
EarI CTCTTC 2 cut(s) 4, 785
Eco130I CCWWGG 2 cut(s) 575, 784
Eco31I GGTCTC 2 cut(s) 253, 466
Eco57I CTGAAG 3 cut(s) 156, 354, 399
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 575, 784
ErhI CCWWGG 2 cut(s) 575, 784
FaeI CATG 1 cut(s) 534
FatI CATG 1 cut(s) 530
FauI CCCGC 1 cut(s) 749
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 1 cut(s) 717
FokI GGATG 2 cut(s) 263, 384
Fsp4HI GCNGC 1 cut(s) 717
FspBI CTAG 2 cut(s) 104, 320
GluI GCNGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 661
Hin1II CATG 1 cut(s) 534
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 2 cut(s) 160, 368
HphI GGTGA 2 cut(s) 611, 772
Hpy166II GTNNAC 2 cut(s) 327, 751
Hpy188I TCNGA 1 cut(s) 614
Hpy188III TCNNGA 2 cut(s) 365, 417
Hpy8I GTNNAC 2 cut(s) 327, 751
Hpy99I CGWCG 2 cut(s) 752, 755
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 6 cut(s) 110, 118, 491, 503, 572, 716
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 661
Hsp92I GRCGYC 1 cut(s) 661
Hsp92II CATG 1 cut(s) 534
Kzo9I GATC 1 cut(s) 419
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 1 cut(s) 728
MaeI CTAG 2 cut(s) 104, 320
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 2 cut(s) 49, 187
MalI GATC 1 cut(s) 421
MboI GATC 1 cut(s) 419
MboII GAAGA 6 cut(s) 21, 30, 184, 347, 678, 772
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 4 cut(s) 130, 359, 653, 780
MluCI AATT 4 cut(s) 69, 92, 111, 512
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 9 cut(s) 25, 82, 155, 223, 411, 454, 605, 670, 673
MseI TTAA 2 cut(s) 273, 350
MslI CAYNNNNRTG 3 cut(s) 123, 535, 703
MspA1I CMGCKG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 666
NdeII GATC 1 cut(s) 419
NlaIII CATG 1 cut(s) 534
NlaIV GGNNCC 3 cut(s) 61, 650, 672
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 534
PciSI GCTCTTC 1 cut(s) 785
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 1 cut(s) 718
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsiI TTATAA 2 cut(s) 239, 284
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 61, 650, 672
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 123, 535, 703
SalI GTCGAC 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 2 cut(s) 273, 350
SatI GCNGC 1 cut(s) 717
Sau3AI GATC 1 cut(s) 419
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 4 cut(s) 130, 359, 653, 780
SfcI CTRYAG 2 cut(s) 81, 714
SgrDI CGTCGACG 1 cut(s) 749
SmiMI CAYNNNNRTG 3 cut(s) 123, 535, 703
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 4 cut(s) 69, 92, 111, 512
SsiI CCGC 1 cut(s) 756
SspI AATATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 104, 320
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 2 cut(s) 575, 784
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 750
TasI AATT 4 cut(s) 69, 92, 111, 512
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 273, 350
Tru9I TTAA 2 cut(s) 273, 350
TscAI CASTG 2 cut(s) 58, 571
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 716
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 17, 571
TspRI CASTG 2 cut(s) 58, 571
XceI RCATGY 1 cut(s) 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 2 cut(s) 104, 320
ZraI GACGTC 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.