Rorug05G0226700

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000208
Physical Location & Seq
Forward (+)
23502306 .. 23502628
323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0226700.1

Sequence Viewer

Length: 234 bp
ATGGAATGCCACTCCTCGATCCGTCGATTCTCAGACTCTCAGTCTCTCTCCGAGTATCCGGCCAGCTCTCTAGCTCTCCAGCTCGCCGGGCTTTCTGGGTTCGATTTTAGGTTCGATTTCTGGGTTCAAGGCTTCAAGGTCGGTGATTCTTCAACCACGAAGCTTGGTGATTCACTGATTCTTCAAGCTCGATTTCTGGGAATTCTGGGTTCGATTTCTGGGCTCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

77

Amino Acids

8.35

Weight (kDa)

6.53

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 201
AgsI TTSAA 4 cut(s) 128, 136, 153, 185
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 5 cut(s) 66, 74, 82, 163, 188
AluI AGCT 5 cut(s) 66, 74, 82, 163, 188
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 155, 179
BanII GRGCYC 1 cut(s) 225
BciVI GTATCC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 71
BfuI GTATCC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 45, 53
BseRI GAGGAG 1 cut(s) 4
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 59, 87
BsmAI GTCTC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 18
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 44, 52
BspPI GGATC 1 cut(s) 13
BssMI GATC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 64, 84
BstDEI CTNAG 2 cut(s) 31, 39
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BsuI GTATCC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 64, 84
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
DdeI CTNAG 2 cut(s) 31, 39
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DriI GACNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 59, 87
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 5 cut(s) 27, 35, 146, 170, 178
HpaII CCGG 2 cut(s) 59, 87
HphI GGTGA 2 cut(s) 155, 179
Hpy188I TCNGA 2 cut(s) 34, 52
Hpy99I CGWCG 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 31, 39
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 72, 76, 81, 92, 100, 106, 182, 191, 204
MaeI CTAG 1 cut(s) 71
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 141, 173
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 25
MspI CCGG 2 cut(s) 59, 87
MspR9I CCNGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 88
NdeII GATC 1 cut(s) 18
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 4 cut(s) 27, 146, 170, 178
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 18
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 225
SetI ASST 7 cut(s) 68, 76, 84, 113, 141, 165, 190
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 201
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 86
TaqI TCGA 6 cut(s) 17, 25, 102, 114, 190, 212
TasI AATT 1 cut(s) 201
TfiI GAWTC 4 cut(s) 27, 146, 170, 178
TscAI CASTG 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 201
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.