MD11G1093800.v1.1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000208
Physical Location & Seq
Reverse (-)
7798418 .. 7801056
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1093800.v1.1.491

Sequence Viewer

Length: 795 bp
ATGAATAGCAGAGCGAGGAGATGGTCTCTTCGTGGAATGACAGCTCTTGTCACTGGTGGAACCAAAGGAATTGGGTATGCTATAGTGGAGGAATTGGCAGGGCTGGGTGCAATTGTGCATACTTGTTCCCGAAATGAAGCTGACCTTAATGACTGCCTGAGTCAGTGGGAGAAGAAGGGTTTCCAAGTAACTGGCTCAGTCTGTGATGTGGTGTCTAAAACCCAAAGAGAGGAGCTTATAAATAAGGTCTCATCACTTTTTGAAGGCAAACTTAACATCCTTATAAACAATGTGGGGACTAGCATACTGAAAGCAACGCTAGAGTACACAGCTGAAGACTACTCATTCGTAATGAGTACCAATCTTGAATCTGTTTACCACTTGTGCCAACTTTCACATCCTCTTCTCAAAGCTTCAGGAGCTGCTAACATCATTTTTTTGTCCTCTACTGCTGGTGTGGTCTCAATTGATGTTGGATCTATATATTCTGCCACTAAAGGTGCACTAAATCAGTTAGCAAAAAACTTAGCATGTGAGTGGGCGAGAGATAACATAAGGACCAACAGTGTGGCACCTTGGTTCATCAAGACTCCCCTCACTGATCCTATTCTCCGAAATGAAAAGAAATTGGAGATGATAAACTCTCGGTGCCCTTTAGGACGTCCTGGAGAGCCAGAGGAGGTGTCTTCCTTGGTAGCATTTCTATGCCTACCTGCAGCCTCTTACATTACTGGGCAGACTATTATCGTCGACGGCGGGGTGACCGTCAATGGCTTGCTCTTCCAAGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

265

Amino Acids

28.44

Weight (kDa)

6.82

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 14 - 206 5.8e-48 short chain dehydrogenase
KR PF08659 14 - 175 7.7e-13 KR domain
adh_short_C2 PF13561 22 - 255 2.3e-56 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 239, 284
AatII GACGTC 1 cut(s) 664
Acc36I ACCTGC 1 cut(s) 721
AccB1I GGYRCC 2 cut(s) 571, 648
AccI GTMKAC 1 cut(s) 750
AciI CCGC 1 cut(s) 756
AclWI GGATC 2 cut(s) 484, 596
AcuI CTGAAG 2 cut(s) 354, 399
AcyI GRCGYC 1 cut(s) 661
AfaI GTAC 2 cut(s) 326, 358
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 2 cut(s) 263, 368
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 6 cut(s) 44, 140, 235, 332, 413, 422
AluI AGCT 6 cut(s) 44, 140, 235, 332, 413, 422
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 3 cut(s) 30, 253, 466
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 2 cut(s) 484, 596
AlwNI CAGNNNCTG 1 cut(s) 422
ApaLI GTGCAC 1 cut(s) 501
ApeKI GCWGC 2 cut(s) 422, 716
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 558
AsuHPI GGTGA 1 cut(s) 772
AvaII GGWCC 1 cut(s) 558
BaeGI GKGCMC 2 cut(s) 505, 653
BanI GGYRCC 2 cut(s) 571, 648
BbsI GAAGAC 2 cut(s) 342, 678
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 2 cut(s) 409, 728
BccI CCATC 1 cut(s) 15
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 3 cut(s) 30, 253, 466
BfaI CTAG 2 cut(s) 300, 320
BfmI CTRYAG 2 cut(s) 81, 714
BfuAI ACCTGC 1 cut(s) 721
BisI GCNGC 2 cut(s) 423, 717
BlsI GCNGC 2 cut(s) 424, 718
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 3 cut(s) 61, 573, 650
BmrFI CCNGG 1 cut(s) 666
BmrI ACTGGG 1 cut(s) 741
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 2 cut(s) 342, 678
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 687
BsaHI GRCGYC 1 cut(s) 661
BsaI GGTCTC 3 cut(s) 30, 253, 466
BsaJI CCNNGG 3 cut(s) 575, 690, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 58, 196, 736
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 3 cut(s) 575, 690, 784
BseGI GGATG 2 cut(s) 276, 397
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 149, 210
BseNI ACTGG 3 cut(s) 58, 196, 736
BseRI GAGGAG 3 cut(s) 31, 245, 692
BseSI GKGCMC 2 cut(s) 505, 653
BseXI GCAGC 2 cut(s) 409, 728
BseYI CCCAGC 1 cut(s) 103
BshNI GGYRCC 2 cut(s) 571, 648
BsiHKAI GWGCWC 1 cut(s) 505
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 3 cut(s) 30, 253, 466
BsmFI GGGAC 1 cut(s) 310
Bso31I GGTCTC 3 cut(s) 30, 253, 466
Bsp1286I GDGCHC 2 cut(s) 505, 653
Bsp143I GATC 2 cut(s) 476, 601
BspACI CCGC 1 cut(s) 756
BspCNI CTCAG 2 cut(s) 150, 209
BspLI GGNNCC 3 cut(s) 61, 573, 650
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 721
BspPI GGATC 2 cut(s) 484, 596
BspQI GCTCTTC 1 cut(s) 785
BspT107I GGYRCC 2 cut(s) 571, 648
BspTNI GGTCTC 3 cut(s) 30, 253, 466
BsrI ACTGG 3 cut(s) 58, 196, 736
BssECI CCNNGG 3 cut(s) 575, 690, 784
BssMI GATC 2 cut(s) 476, 601
BssNI GRCGYC 1 cut(s) 661
BssT1I CCWWGG 3 cut(s) 575, 690, 784
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 566, 766
Bst6I CTCTTC 3 cut(s) 33, 408, 785
BstACI GRCGYC 1 cut(s) 661
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 3 cut(s) 158, 196, 526
BstEII GGTNACC 1 cut(s) 760
BstF5I GGATG 2 cut(s) 276, 397
BstKTI GATC 2 cut(s) 479, 604
BstMAI GTCTC 3 cut(s) 30, 253, 466
BstMBI GATC 2 cut(s) 476, 601
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 760
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 2 cut(s) 81, 714
BstSLI GKGCMC 2 cut(s) 505, 653
BstV1I GCAGC 2 cut(s) 409, 728
BstV2I GAAGAC 2 cut(s) 342, 678
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 2 cut(s) 191, 568
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 2 cut(s) 276, 397
BtsIMutI CAGTG 4 cut(s) 51, 170, 571, 597
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 1 cut(s) 776
CaiI CAGNNNCTG 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 325, 357
CviAII CATG 1 cut(s) 531
CviQI GTAC 2 cut(s) 325, 357
DdeI CTNAG 3 cut(s) 158, 196, 526
DpnI GATC 2 cut(s) 478, 603
DpnII GATC 2 cut(s) 476, 601
Eam1104I CTCTTC 3 cut(s) 33, 408, 785
EarI CTCTTC 3 cut(s) 33, 408, 785
Eco130I CCWWGG 3 cut(s) 575, 690, 784
Eco31I GGTCTC 3 cut(s) 30, 253, 466
Eco47I GGWCC 1 cut(s) 558
Eco57I CTGAAG 2 cut(s) 354, 399
Eco91I GGTNACC 1 cut(s) 760
EcoO65I GGTNACC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 3 cut(s) 575, 690, 784
ErhI CCWWGG 3 cut(s) 575, 690, 784
FaeI CATG 1 cut(s) 534
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 255, 287
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 530
FauI CCCGC 1 cut(s) 749
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 2 cut(s) 423, 717
FokI GGATG 2 cut(s) 263, 384
Fsp4HI GCNGC 2 cut(s) 423, 717
FspBI CTAG 2 cut(s) 300, 320
GluI GCNGC 2 cut(s) 423, 717
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 687
Hin1I GRCGYC 1 cut(s) 661
Hin1II CATG 1 cut(s) 534
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 160, 368, 589
HphI GGTGA 1 cut(s) 772
Hpy166II GTNNAC 4 cut(s) 327, 376, 503, 751
Hpy188I TCNGA 1 cut(s) 614
Hpy188III TCNNGA 4 cut(s) 129, 365, 417, 586
Hpy8I GTNNAC 4 cut(s) 327, 376, 503, 751
Hpy99I CGWCG 2 cut(s) 752, 755
HpyAV CCTTC 2 cut(s) 169, 257
HpyCH4III ACNGT 2 cut(s) 566, 766
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 4 cut(s) 110, 118, 503, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 3 cut(s) 158, 196, 526
HpySE526I ACGT 1 cut(s) 661
Hsp92I GRCGYC 1 cut(s) 661
Hsp92II CATG 1 cut(s) 534
Kzo9I GATC 2 cut(s) 476, 601
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 3 cut(s) 232, 419, 788
Lsp1109I GCAGC 2 cut(s) 409, 728
MaeI CTAG 2 cut(s) 300, 320
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 3 cut(s) 49, 187, 760
MalI GATC 2 cut(s) 478, 603
MboI GATC 2 cut(s) 476, 601
MboII GAAGA 6 cut(s) 20, 184, 347, 395, 678, 772
MfeI CAATTG 2 cut(s) 111, 465
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 505, 653
MluCI AATT 5 cut(s) 69, 92, 111, 465, 626
MlyI GAGTC 2 cut(s) 169, 583
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 9 cut(s) 9, 82, 223, 411, 454, 605, 670, 673, 730
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 147, 273
MslI CAYNNNNRTG 2 cut(s) 535, 703
MspA1I CMGCKG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 2 cut(s) 111, 465
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 1 cut(s) 419
NdeII GATC 2 cut(s) 476, 601
NlaIII CATG 1 cut(s) 534
NlaIV GGNNCC 3 cut(s) 61, 573, 650
NmuCI GTSAC 2 cut(s) 49, 760
NspI RCATGY 1 cut(s) 534
PciSI GCTCTTC 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 2 cut(s) 424, 718
PleI GAGTC 2 cut(s) 168, 583
PpsI GAGTC 2 cut(s) 168, 583
PsiI TTATAA 2 cut(s) 239, 284
Psp6I CCWGG 1 cut(s) 664
PspEI GGTNACC 1 cut(s) 760
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 61, 573, 650
PspPI GGNCC 1 cut(s) 558
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 326, 358
RsaNI GTAC 2 cut(s) 325, 357
RseI CAYNNNNRTG 2 cut(s) 535, 703
SalI GTCGAC 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 2 cut(s) 147, 273
SatI GCNGC 2 cut(s) 423, 717
Sau3AI GATC 2 cut(s) 476, 601
Sau96I GGNCC 1 cut(s) 558
SchI GAGTC 2 cut(s) 169, 583
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 2 cut(s) 505, 653
SfcI CTRYAG 2 cut(s) 81, 714
SgrDI CGTCGACG 1 cut(s) 749
SinI GGWCC 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 535, 703
Sse9I AATT 5 cut(s) 69, 92, 111, 465, 626
SsiI CCGC 1 cut(s) 756
SspMI CTAG 2 cut(s) 300, 320
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 3 cut(s) 575, 690, 784
TaaI ACNGT 2 cut(s) 566, 766
TaiI ACGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 750
TasI AATT 5 cut(s) 69, 92, 111, 465, 626
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 147, 273
Tru9I TTAA 2 cut(s) 147, 273
TscAI CASTG 4 cut(s) 58, 170, 571, 604
TseFI GTSAC 2 cut(s) 49, 760
TseI GCWGC 2 cut(s) 422, 716
Tsp45I GTSAC 2 cut(s) 49, 760
TspDTI ATGAA 4 cut(s) 17, 150, 571, 633
TspRI CASTG 4 cut(s) 58, 170, 571, 604
VneI GTGCAC 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 558
XceI RCATGY 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 750
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 300, 320
ZraI GACGTC 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.