RchiOBHm_Chr4g0408561

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000208
Physical Location & Seq
Reverse (-)
31354768 .. 31362176
7409 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37964

Sequence Viewer

Length: 828 bp
ATGATCGAAGTTGAGAGAAAGATGGCGACAACAGATGTCAATAGCAGAAACAGGAGATGGTCTCTTGAGGGGATGACTGCACTTGTCACCGGTGGAACCAAAGGGATTGGGTATGCTATTGTGGAAGAATTGGCTGGACTAGGGGCAAGCGTACATACTTGTGCTCGAAATGAAGTCCTACTCAATGACTGCTTGAGTCAATGGAAGTTGAAGGGTTTTCATAAAGTTACTGGTTCGATCTGTGATATGGTCTTAAAAACCCAACGTGAGGAGCTAATACACAGGGTCTCATTGCTGTTTAATGGGAAGCTTAACATCCTTATAAACAACGTGGGAACAAATATACCAAAACCAACAACCGAGTACGCAGCTGAAGATTACTCATTTATCATGAGTACCAATCTTGAATCCACATACCACTTGTGCCAACTTGCACATCCTCTTCTCAAAGATTCAGGAGCTGGTAACATAATTCTTTTGTCATCTGTTGCTGGTGTGGTATCACTTGGGAAGGTTGGGAGTATATATGCTGCCACTAAAGGAGCAATGAATCAATTGGCAAAAAACTTGGCGTGTGAATGGGCGAAAGATAAGATAAGGACTAACAGTGTTGCACCTTGGTTCATCAGAACTCCCCTCGCTGAACCTTATCTGAATGATGTAAAAAATTTGGAGGCCGTGAACTCTCGAACCCCTTTAGGACGGCCTGGAGAGCCAGAAGAGGTGTCTGCATTGGTAGCATTTTTGTGCCTCCCCGCAGCCTCTTACATAACTGGACAGACTATTTGCATCGACGGAGGGATGACTATCAATGGCTTTTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

275

Amino Acids

29.81

Weight (kDa)

7.58

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 26 - 217 3.5e-42 short chain dehydrogenase
KR PF08659 26 - 189 1e-05 KR domain
adh_short_C2 PF13561 34 - 269 6.1e-52 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AciI CCGC 1 cut(s) 756
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 153, 365, 397
AfiI CCNNNNNNNGG 1 cut(s) 268
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 211, 407
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 4 cut(s) 274, 310, 371, 461
AluI AGCT 4 cut(s) 274, 310, 371, 461
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 66, 292
AlwNI CAGNNNCTG 1 cut(s) 461
AoxI GGCC 2 cut(s) 675, 704
ApeKI GCWGC 3 cut(s) 368, 530, 758
ApoI RAATTY 1 cut(s) 667
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
AsiGI ACCGGT 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 380, 517, 770
BccI CCATC 2 cut(s) 16, 51
BceAI ACGGC 2 cut(s) 662, 719
BciT130I CCWGG 1 cut(s) 708
BcoDI GTCTC 2 cut(s) 66, 292
BfaI CTAG 2 cut(s) 140, 826
BisI GCNGC 3 cut(s) 369, 531, 759
BlsI GCNGC 3 cut(s) 370, 532, 760
Bme1390I CCNGG 1 cut(s) 708
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 708
BmsI GCATC 1 cut(s) 798
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 86, 214
BsaBI GATNNNNATC 1 cut(s) 806
BsaI GGTCTC 2 cut(s) 66, 292
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 235, 778
Bse3DI GCAATG 2 cut(s) 290, 552
Bse8I GATNNNNATC 1 cut(s) 806
BseBI CCWGG 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 4 cut(s) 78, 315, 436, 807
BseJI GATNNNNATC 1 cut(s) 806
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 2 cut(s) 290, 552
BseNI ACTGG 2 cut(s) 235, 778
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 380, 517, 770
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 677, 706
BshTI ACCGGT 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 66, 292
BsnI GGCC 2 cut(s) 677, 706
Bso31I GGTCTC 2 cut(s) 66, 292
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 3, 237
BspACI CCGC 1 cut(s) 756
BspANI GGCC 2 cut(s) 677, 706
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 97
BspTNI GGTCTC 2 cut(s) 66, 292
BsrDI GCAATG 2 cut(s) 290, 552
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 235, 778
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 2 cut(s) 3, 237
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 2 cut(s) 447, 714
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 4 cut(s) 78, 315, 436, 807
BstKTI GATC 2 cut(s) 6, 240
BstMAI GTCTC 2 cut(s) 66, 292
BstMBI GATC 2 cut(s) 3, 237
BstMWI GCNNNNNNNGC 2 cut(s) 712, 737
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 1 cut(s) 706
BstV1I GCAGC 3 cut(s) 380, 517, 770
BsuRI GGCC 2 cut(s) 677, 706
BtsCI GGATG 4 cut(s) 78, 315, 436, 807
BtsIMutI CAGTG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 461
CciI TCATGA 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 89
Csp6I GTAC 3 cut(s) 152, 364, 396
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 1 cut(s) 391
CviQI GTAC 3 cut(s) 152, 364, 396
DpnI GATC 2 cut(s) 5, 239
DpnII GATC 2 cut(s) 3, 237
Eam1104I CTCTTC 2 cut(s) 447, 714
EarI CTCTTC 2 cut(s) 447, 714
Eco130I CCWWGG 1 cut(s) 617
Eco31I GGTCTC 2 cut(s) 66, 292
Eco57I CTGAAG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 1 cut(s) 394
FatI CATG 1 cut(s) 390
FauI CCCGC 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 369, 531, 759
FokI GGATG 4 cut(s) 85, 302, 423, 814
Fsp4HI GCNGC 3 cut(s) 369, 531, 759
FspBI CTAG 2 cut(s) 140, 826
GluI GCNGC 3 cut(s) 369, 531, 759
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 2 cut(s) 677, 706
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 4 cut(s) 196, 407, 452, 550
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 2 cut(s) 629, 654
Hpy188III TCNNGA 5 cut(s) 65, 391, 404, 456, 687
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 2 cut(s) 205, 505
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 265, 330
HpyCH4V TGCA 5 cut(s) 80, 434, 614, 731, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 712, 737
HpySE526I ACGT 2 cut(s) 265, 330
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 2 cut(s) 3, 237
LmnI GCTCC 3 cut(s) 271, 458, 542
Lsp1109I GCAGC 3 cut(s) 380, 517, 770
LweI GCATC 1 cut(s) 798
MaeI CTAG 2 cut(s) 140, 826
MaeII ACGT 2 cut(s) 265, 330
MaeIII GTNAC 3 cut(s) 85, 226, 464
MalI GATC 2 cut(s) 5, 239
MboI GATC 2 cut(s) 3, 237
MboII GAAGA 4 cut(s) 137, 386, 434, 731
MfeI CAATTG 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 4 cut(s) 128, 471, 554, 667
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 9 cut(s) 61, 262, 450, 647, 667, 715, 761, 772, 791
MseI TTAA 3 cut(s) 254, 300, 312
MslI CAYNNNNRTG 2 cut(s) 159, 745
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 708
MunI CAATTG 1 cut(s) 554
MvaI CCWGG 1 cut(s) 708
MwoI GCNNNNNNNGC 2 cut(s) 712, 737
NdeII GATC 2 cut(s) 3, 237
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 85
PagI TCATGA 1 cut(s) 390
PfeI GAWTC 3 cut(s) 407, 452, 550
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 3 cut(s) 370, 532, 760
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PsiI TTATAA 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 3 cut(s) 153, 365, 397
RsaNI GTAC 3 cut(s) 152, 364, 396
RseI CAYNNNNRTG 2 cut(s) 159, 745
SaqAI TTAA 3 cut(s) 254, 300, 312
SatI GCNGC 3 cut(s) 369, 531, 759
Sau3AI GATC 2 cut(s) 3, 237
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 708
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 798
SgrAI CRCCGGYG 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 159, 745
SmlI CTYRAG 2 cut(s) 65, 193
SmoI CTYRAG 2 cut(s) 65, 193
Sse9I AATT 4 cut(s) 128, 471, 554, 667
SsiI CCGC 1 cut(s) 756
SspMI CTAG 2 cut(s) 140, 826
StyD4I CCNGG 1 cut(s) 706
StyI CCWWGG 1 cut(s) 617
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 268, 333
TaqI TCGA 5 cut(s) 6, 166, 236, 688, 792
TasI AATT 4 cut(s) 128, 471, 554, 667
TfiI GAWTC 3 cut(s) 407, 452, 550
Tru1I TTAA 3 cut(s) 254, 300, 312
Tru9I TTAA 3 cut(s) 254, 300, 312
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 368, 530, 758
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 186, 209, 563, 613, 810
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 1 cut(s) 613
XapI RAATTY 1 cut(s) 667
XspI CTAG 2 cut(s) 140, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.