Prupe.6G069700_v2.0.a1

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000208
Physical Location & Seq
Reverse (-)
4778711 .. 4781055
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069700.1

Sequence Viewer

Length: 801 bp
ATGGGTAGCAGAGACAGAGAGAGAAGATGGTCTCTTGAGGGATTGACTGCTCTTGTTACTGGAGGAACCAAAGGGATTGGGCACGCTATAGTGGAAGAATTGGCAGGGCTAGGTGCAACTATTCATACTTGTGCTCGGAATGAAGTTGATCTCAATGACTGCTTGAGCCAATGGGAGAAGAAGGGTTTTCAAGTCACTGGTTCAGTGTGTGATGTGGTGTCAAGAGCCCAAAGAGAGGAGCTTATAAACAAAGTCTCATCTTTGTTTGATGGAAAACTTAACATCCTTATAAACAATGTGGGAACAAGCATACTAAAACCAACGATGGAGTTCACAGCTGAAGATTATACCTTTCTTATGAGTACCAATCTTGAATCTGCTTATCACTTCTGCCAACTTGCACATCCTCTGCTCAAAGCTTCAGGGGCCGGTAACATTGTTTTTCTGTCTTCTGTTGCTGGTGTGGTTTCGGTGGAAGTTGGATCTGCATATTCTGCCACTAAAGGAGCAATAAATCAATTAGCCAAAAACTTGGCATGTGAGTGGGCAAAAGATAACATAAGGATTAATAGTGTTGCACCTTGGTTCATCAAAACTCCCCTCGCTGAACATTTTCTCAGCGACGAATTTTTTTTGAAGATCATCAACTCTCGAACACCATTAGGACGCCCTGGAGAGCCAGAAGAGGTGTCAGCCTTGGTGGCATTTCTATGCCTACCCGCAGCCTCTTACATAACTGGCCAAACTATTTGCGTTGACGGAGGAATGACTGTCAATGGCCTCCTCTTCCAAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

267

Amino Acids

28.61

Weight (kDa)

5.59

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 245, 290
AciI CCGC 1 cut(s) 720
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 2 cut(s) 360, 405
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 191, 374, 637
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 3 cut(s) 241, 338, 419
AluI AGCT 3 cut(s) 241, 338, 419
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 3 cut(s) 6, 36, 259
AlwI GGATC 1 cut(s) 490
AoxI GGCC 3 cut(s) 426, 739, 778
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 1 cut(s) 626
AseI ATTAAT 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 426
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 741
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 734
BccI CCATC 3 cut(s) 21, 263, 319
BciT130I CCWGG 1 cut(s) 672
BcoDI GTCTC 3 cut(s) 6, 36, 259
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 701
BisI GCNGC 1 cut(s) 723
BlsI GCNGC 1 cut(s) 724
Bme1390I CCNGG 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 2 cut(s) 67, 427
BmrFI CCNGG 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 2 cut(s) 81, 693
BpuEI CTTGAG 2 cut(s) 56, 184
BsaHI GRCGYC 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 4 cut(s) 581, 670, 696, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 64, 202, 742
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 4 cut(s) 581, 670, 696, 790
BseGI GGATG 2 cut(s) 282, 403
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 631
BseNI ACTGG 3 cut(s) 64, 202, 742
BseRI GAGGAG 2 cut(s) 251, 773
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 734
BshFI GGCC 3 cut(s) 428, 741, 780
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 3 cut(s) 6, 36, 259
BsnI GGCC 3 cut(s) 428, 741, 780
Bso31I GGTCTC 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 84, 136, 229
Bsp143I GATC 3 cut(s) 148, 482, 639
BspACI CCGC 1 cut(s) 720
BspANI GGCC 3 cut(s) 428, 741, 780
BspCNI CTCAG 1 cut(s) 630
BspLI GGNNCC 2 cut(s) 67, 427
BspPI GGATC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 3 cut(s) 64, 202, 742
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 4 cut(s) 581, 670, 696, 790
BssMI GATC 3 cut(s) 148, 482, 639
BssNI GRCGYC 1 cut(s) 667
BssT1I CCWWGG 3 cut(s) 581, 696, 790
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 1 cut(s) 772
Bst6I CTCTTC 2 cut(s) 678, 791
BstACI GRCGYC 1 cut(s) 667
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 617
BstF5I GGATG 2 cut(s) 282, 403
BstKTI GATC 3 cut(s) 151, 485, 642
BstMAI GTCTC 3 cut(s) 6, 36, 259
BstMBI GATC 3 cut(s) 148, 482, 639
BstMWI GCNNNNNNNGC 3 cut(s) 425, 494, 701
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 734
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 482
BsuRI GGCC 3 cut(s) 428, 741, 780
BtsCI GGATG 2 cut(s) 282, 403
BtsIMutI CAGTG 2 cut(s) 195, 210
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 426
CseI GACGC 1 cut(s) 675
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 537, 798
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 617
DpnI GATC 3 cut(s) 150, 484, 641
DpnII GATC 3 cut(s) 148, 482, 639
EaeI YGGCCR 1 cut(s) 739
Eam1104I CTCTTC 2 cut(s) 678, 791
EarI CTCTTC 2 cut(s) 678, 791
Eco130I CCWWGG 3 cut(s) 581, 696, 790
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 360, 405
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 3 cut(s) 581, 696, 790
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 3 cut(s) 581, 696, 790
FaeI CATG 2 cut(s) 540, 801
FatI CATG 2 cut(s) 536, 797
FauI CCCGC 1 cut(s) 727
Fnu4HI GCNGC 1 cut(s) 723
FokI GGATG 2 cut(s) 269, 390
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 723
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 723
GsuI CTGGAG 2 cut(s) 81, 693
HaeIII GGCC 3 cut(s) 428, 741, 780
HapII CCGG 1 cut(s) 429
HgaI GACGC 1 cut(s) 675
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 2 cut(s) 540, 801
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 429
Hpy166II GTNNAC 2 cut(s) 333, 757
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 4 cut(s) 35, 222, 371, 651
Hpy8I GTNNAC 2 cut(s) 333, 757
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4V TGCA 4 cut(s) 116, 401, 488, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 494, 701
HpyF3I CTNAG 1 cut(s) 617
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 2 cut(s) 540, 801
Kzo9I GATC 3 cut(s) 148, 482, 639
LmnI GCTCC 3 cut(s) 238, 506, 794
Lsp1109I GCAGC 1 cut(s) 734
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 3 cut(s) 55, 193, 431
MalI GATC 3 cut(s) 150, 484, 641
MboI GATC 3 cut(s) 148, 482, 639
MboII GAAGA 8 cut(s) 36, 107, 190, 353, 441, 649, 695, 778
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 3 cut(s) 84, 136, 229
MlsI TGGCCA 1 cut(s) 741
MluCI AATT 3 cut(s) 98, 518, 626
MluNI TGGCCA 1 cut(s) 741
MmeI TCCRAC 1 cut(s) 460
Mox20I TGGCCA 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 1 cut(s) 741
MseI TTAA 2 cut(s) 279, 567
MslI CAYNNNNRTG 3 cut(s) 129, 541, 709
Msp20I TGGCCA 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 672
MwoI GCNNNNNNNGC 3 cut(s) 425, 494, 701
NdeII GATC 3 cut(s) 148, 482, 639
NlaIII CATG 2 cut(s) 540, 801
NlaIV GGNNCC 2 cut(s) 67, 427
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 724
PshBI ATTAAT 1 cut(s) 567
PsiI TTATAA 2 cut(s) 245, 290
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 2 cut(s) 67, 427
PspPI GGNCC 1 cut(s) 426
PsuI RGATCY 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 3 cut(s) 129, 541, 709
SaqAI TTAA 2 cut(s) 279, 567
SatI GCNGC 1 cut(s) 723
Sau3AI GATC 3 cut(s) 148, 482, 639
Sau96I GGNCC 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 3 cut(s) 84, 136, 229
SetI ASST 7 cut(s) 115, 243, 340, 353, 421, 583, 690
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 3 cut(s) 129, 541, 709
SmlI CTYRAG 2 cut(s) 35, 163
SmoI CTYRAG 2 cut(s) 35, 163
Sse9I AATT 3 cut(s) 98, 518, 626
SsiI CCGC 1 cut(s) 720
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 670
StyI CCWWGG 3 cut(s) 581, 696, 790
TaaI ACNGT 1 cut(s) 772
TaqI TCGA 1 cut(s) 652
TasI AATT 3 cut(s) 98, 518, 626
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 279, 567
Tru9I TTAA 2 cut(s) 279, 567
TscAI CASTG 2 cut(s) 202, 210
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 113, 156, 577
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 2 cut(s) 202, 210
VspI ATTAAT 1 cut(s) 567
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.