AT2G29320

tropinone reductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12592129 .. 12593803
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29320.1

Sequence Viewer

Length: 810 bp
ATGGTCACTAGAAAAATGGACAAAAGATTATGGAGTCTTCAAGGTATGACTGCTCTTGTGACCGGTGCAGCCAGCGGAATCGGTTATGCCATAGTAGAAGAGTTAGCTGGTTTTGGAGCTAAAATCCACATATGTGACATATCCAAAACTTTGCTCAATCAAAGTTTAAGCGAATGGGAAAATAAAGGGTTTCAAGTGAGTGGTTCAGTATGTGATGTAACCTCTCATCCTGAGAGAGAAAAACTGATGCAAACCGTCTCCTCGATTTTCGATGGCAAACTCAACATTCTTGTAAATAACGTGGGGGTACTTCGCGGAAAGCCAACAACAGAATATGTGGCAGACGATTTCACTTTTCATATATCAACTAACTTGGAAGCTGCTTACCATTTTTGTCAACTTTCACATCCTCTCTTAAAGGCTTCAGGCTATGGAAGCATTGTATTCCTTTCCTCTGTTGCTGGGGTTGTATCACTAATTGACTGTGGATCCATTTATGGTCTAACAAAAGGAGCTCTAAATCAATTAGCTAGAAACTTGGCATGTGAATGGGCAAAAGACGGCATAAGAGCCAATGCTGTTGCACCTAATGTTGTCAAGACTGCTCAGTCTCAATCGTTTCTTGAAGACGTCAGTAAAAAGGAGGGATTGTTGAGTAGAACTCCACTTGGCCGTGTTGGAGAGCCGAATGAAGTTTCATCACTAGTGGTCTTCTTGTGTCTACCTGCAGCTTCTTATATCACAGGTCAAACCATTTGTGTTGATGGAGGTCTCACGGTTAACGGTTTCTCCTATCAACCACATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

269

Amino Acids

28.78

Weight (kDa)

6.59

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 17 - 209 4.5e-45 short chain dehydrogenase
KR PF08659 17 - 178 7.3e-09 KR domain
adh_short_C2 PF13561 22 - 259 8.6e-58 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 607
AatII GACGTC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 721
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 75, 315
AclWI GGATC 2 cut(s) 483, 496
AcoI YGGCCR 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 630
AfaI GTAC 1 cut(s) 309
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 41, 194, 626
AhlI ACTAGT 1 cut(s) 703
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 6 cut(s) 107, 119, 380, 515, 530, 731
AluI AGCT 6 cut(s) 107, 119, 380, 515, 530, 731
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 3 cut(s) 262, 615, 776
AlwI GGATC 2 cut(s) 483, 496
AoxI GGCC 1 cut(s) 670
ApeKI GCWGC 3 cut(s) 68, 380, 728
AsiGI ACCGGT 1 cut(s) 62
BamHI GGATCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 3 cut(s) 29, 633, 703
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 80, 367, 740
BccI CCATC 2 cut(s) 266, 758
BceAI ACGGC 2 cut(s) 577, 657
BcoDI GTCTC 3 cut(s) 262, 615, 776
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 3 cut(s) 9, 531, 704
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 733
BisI GCNGC 3 cut(s) 69, 381, 729
BlsI GCNGC 3 cut(s) 70, 382, 730
BmiI GGNNCC 1 cut(s) 490
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 3 cut(s) 29, 633, 703
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BsaHI GRCGYC 1 cut(s) 630
BsaI GGTCTC 1 cut(s) 776
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 4 cut(s) 635, 665, 773, 803
Bse118I RCCGGY 1 cut(s) 62
BseGI GGATG 2 cut(s) 226, 406
BseMII CTCAG 2 cut(s) 222, 620
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 3 cut(s) 80, 367, 740
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 672
BshTI ACCGGT 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 3 cut(s) 262, 615, 776
BsmBI CGTCTC 1 cut(s) 262
BsnI GGCC 1 cut(s) 672
Bso31I GGTCTC 1 cut(s) 776
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 1 cut(s) 488
BspACI CCGC 2 cut(s) 75, 315
BspANI GGCC 1 cut(s) 672
BspCNI CTCAG 2 cut(s) 223, 619
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 2 cut(s) 483, 496
BspTNI GGTCTC 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 1 cut(s) 488
BssNI GRCGYC 1 cut(s) 630
Bst4CI ACNGT 4 cut(s) 256, 485, 778, 785
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 231, 606
BstF5I GGATG 2 cut(s) 226, 406
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 1 cut(s) 491
BstMAI GTCTC 3 cut(s) 262, 615, 776
BstMBI GATC 1 cut(s) 488
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 546, 806
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 80, 367, 740
BstV2I GAAGAC 3 cut(s) 29, 633, 703
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 1 cut(s) 672
BtsCI GGATG 2 cut(s) 226, 406
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 62
Csp6I GTAC 1 cut(s) 308
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 2 cut(s) 543, 803
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 2 cut(s) 231, 606
DpnI GATC 1 cut(s) 490
DpnII GATC 1 cut(s) 488
DrdI GACNNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 515
EcoT38I GRGCYC 1 cut(s) 517
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 2 cut(s) 546, 806
FatI CATG 2 cut(s) 542, 802
FauNDI CATATG 1 cut(s) 131
FblI GTMKAC 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 69, 381, 729
FokI GGATG 2 cut(s) 213, 393
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 3 cut(s) 69, 381, 729
FspBI CTAG 3 cut(s) 9, 531, 704
GluI GCNGC 3 cut(s) 69, 381, 729
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 672
HapII CCGG 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 630
Hin1II CATG 2 cut(s) 546, 806
HincII GTYRAC 2 cut(s) 398, 781
HindII GTYRAC 2 cut(s) 398, 781
HinfI GANTC 2 cut(s) 34, 78
HpaI GTTAAC 1 cut(s) 781
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 3 cut(s) 398, 722, 781
Hpy188III TCNNGA 3 cut(s) 230, 598, 623
Hpy8I GTNNAC 3 cut(s) 398, 722, 781
HpyCH4III ACNGT 4 cut(s) 256, 485, 778, 785
HpyCH4IV ACGT 2 cut(s) 300, 630
HpyCH4V TGCA 4 cut(s) 68, 250, 584, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 2 cut(s) 231, 606
HpySE526I ACGT 2 cut(s) 300, 630
Hsp92I GRCGYC 1 cut(s) 630
Hsp92II CATG 2 cut(s) 546, 806
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 1 cut(s) 488
LmnI GCTCC 2 cut(s) 116, 512
LpnPI CCDG 8 cut(s) 76, 85, 93, 243, 411, 447, 729, 738
Lsp1109I GCAGC 3 cut(s) 80, 367, 740
LweI GCATC 1 cut(s) 237
MaeI CTAG 3 cut(s) 9, 531, 704
MaeII ACGT 2 cut(s) 300, 630
MaeIII GTNAC 4 cut(s) 4, 58, 134, 217
MalI GATC 1 cut(s) 490
MboI GATC 1 cut(s) 488
MboII GAAGA 4 cut(s) 29, 110, 638, 703
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 2 cut(s) 477, 524
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 6 cut(s) 232, 271, 420, 463, 637, 761
MseI TTAA 3 cut(s) 167, 416, 780
MslI CAYNNNNRTG 2 cut(s) 132, 547
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 435
NdeI CATATG 1 cut(s) 131
NdeII GATC 1 cut(s) 488
NlaIII CATG 2 cut(s) 546, 806
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 3 cut(s) 4, 58, 134
NspI RCATGY 2 cut(s) 546, 806
OliI CACNNNNGTG 1 cut(s) 132
PfeI GAWTC 1 cut(s) 78
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 3 cut(s) 70, 382, 730
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 490
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 2 cut(s) 132, 547
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 3 cut(s) 167, 416, 780
SatI GCNGC 3 cut(s) 69, 381, 729
Sau3AI GATC 1 cut(s) 488
SchI GAGTC 1 cut(s) 43
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 726
SmiMI CAYNNNNRTG 2 cut(s) 132, 547
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 2 cut(s) 477, 524
SsiI CCGC 2 cut(s) 75, 315
SspMI CTAG 3 cut(s) 9, 531, 704
SstI GAGCTC 1 cut(s) 517
TaaI ACNGT 4 cut(s) 256, 485, 778, 785
TaiI ACGT 2 cut(s) 303, 633
TaqI TCGA 2 cut(s) 263, 270
TasI AATT 2 cut(s) 477, 524
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 3 cut(s) 167, 416, 780
Tru9I TTAA 3 cut(s) 167, 416, 780
TseFI GTSAC 3 cut(s) 4, 58, 134
TseI GCWGC 3 cut(s) 68, 380, 728
Tsp45I GTSAC 3 cut(s) 4, 58, 134
TspDTI ATGAA 3 cut(s) 347, 687, 705
XceI RCATGY 2 cut(s) 546, 806
XmiI GTMKAC 1 cut(s) 721
XspI CTAG 3 cut(s) 9, 531, 704
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.