pycom11g07950

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000208
Physical Location & Seq
Reverse (-)
6099441 .. 6099928
488 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07950.1

Sequence Viewer

Length: 306 bp
ATGAATAGCAGAGAGAGGAGATGGTCTCTTCGTGGAATGACAGCTCTTGTCACCGGTGGAAGCAAAGGAATTGGGTATGCGATAGTGGAGGAATTGGCAGGGCTGGCTCTAATTGTGCATACTTGTTCCCGAAATGAAGTTGACCTTAATGGCTGCCTGAGTCAGTGGGAGAAGAAGGGCTTTCAAGTCACAGGCTCAGTCTATGATGTGGTGCCAAAAACCCAAAGAGAAGAGCTTATAAATAAGGTCTCATCAAATTTTTATGGCAAACTCAACATCCTTGCAGGTAGAAGACTAATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

102

Amino Acids

11.19

Weight (kDa)

9.56

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 14 - 94 3.5e-12 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07440 AT1G07440 AT2G29150 AT2G29170 AT2G29290 AT2G29290 AT2G29300 AT2G29300 AT2G29310 AT2G29310 AT2G29310 AT2G29310 AT2G29320 AT2G29320 AT2G29320 AT2G29340 AT2G29340 AT2G29340 AT2G29340 AT2G29350 AT2G29350 AT2G29350
fragaria_vesca FvH4_3g01040 FvH4_3g36954 FvH4_3g36954 FvH4_3g36955 FvH4_3g36960 FvH4_3g36960 FvH4_3g37000 FvH4_3g37000 FvH4_3g37000
malus_domestica MD03G1085500.v1.1 MD03G1085700.v1.1 MD04G1134700.v1.1 MD11G1093400.v1.1 MD11G1093500.v1.1 MD11G1093700.v1.1 MD11G1093800.v1.1 MD11G1093900.v1.1 MD11G1094300.v1.1
prunus_persica Prupe.6G068900_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069000_v2.0.a1 Prupe.6G069100_v2.0.a1 Prupe.6G069200_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069500_v2.0.a1 Prupe.6G069700_v2.0.a1 Prupe.6G069900_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1 Prupe.6G070000_v2.0.a1
pyrus_communis pycom03g06770 pycom11g07900 pycom11g07910 pycom11g07920 pycom11g07940 pycom11g07950 pycom11g07970 pycom11g07990 pycom12g14220
rosa_chinensis RchiOBHm_Chr2g0131701 RchiOBHm_Chr3g0473751 RchiOBHm_Chr4g0408441 RchiOBHm_Chr4g0408481 RchiOBHm_Chr4g0408501 RchiOBHm_Chr4g0408561 RchiOBHm_Chr4g0408611 RchiOBHm_Chr4g0408661 RchiOBHm_Chr4g0408721 RchiOBHm_Chr5g0045781 RchiOBHm_Chr5g0045851 RchiOBHm_Chr5g0068421 RchiOBHm_Chr7g0222951
rosa_laevigata RLG00000008645 RLG00000008646 RLG00000008649 RLG00000035864
rosa_multiflora Rmu_sc0000774.1_g000007 Rmu_sc0001746.1_g000006 Rmu_sc0002589.1_g000024 Rmu_sc0002736.1_g000004 Rmu_sc0003677.1_g000008 Rmu_sc0005087.1_g000003 Rmu_sc0005878.1_g000021 Rmu_sc0006514.1_g000011 Rmu_sc0025386.1_g000001 Rmu_sc0032361.1_g000001
rosa_roxburghii Rroxscaffold_1G00012360 Rroxscaffold_1G00013090 Rroxscaffold_1G00035120 Rroxscaffold_3G00236380 Rroxscaffold_5G00352920 Rroxscaffold_5G00352950 Rroxscaffold_5G00352980 Rroxscaffold_5G00353000 Rroxscaffold_5G00353020
rosa_rugosa Rorug02G0295300 Rorug04G0086300 Rorug04G0094800 Rorug05G0226700 Rorug05G0378300 Rorug05G0389700 Rorug07G0212400 Rorug07G0219800 Rorug07G0219900
rosa_samantha Rh1AG094900 Rh2AG351700 Rh2BG358700 Rh2CG337200 Rh2DG376100 Rh3DG297400 Rh3DG365100 Rh4AG150600 Rh4AG150800 Rh4BG147900 Rh4BG148000 Rh4BG148100 Rh4CG158000 Rh4CG158700 Rh4CG159300 Rh4DG143600 Rh4DG143800 Rh4DG144200 Rh5AG307900 Rh5AG448500 Rh5BG316300 Rh5BG316700 Rh5BG466500 Rh5CG342400 Rh5CG488100 Rh5DG326600 Rh5DG480000 Rh7AG357400 Rh7AG406600 Rh7BG345700 Rh7CG375600 Rh7DG352300
rosa_wichuraiana Rw2G028560 Rw4G012300 Rw4G012330 Rw4G012340 Rw4G012350 Rw5G022400 Rw5G028830 Rw5G041870 Rw7G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 53
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 2 cut(s) 44, 235
AluI AGCT 2 cut(s) 44, 235
Alw26I GTCTC 2 cut(s) 30, 253
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 256
AsiGI ACCGGT 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 30, 253
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 298
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BsaI GGTCTC 2 cut(s) 30, 253
BsaWI WCCGGW 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 53
BseGI GGATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 149, 210
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 53
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 30, 253
Bso31I GGTCTC 2 cut(s) 30, 253
BspCNI CTCAG 2 cut(s) 150, 209
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 2 cut(s) 30, 253
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
Bst6I CTCTTC 2 cut(s) 33, 225
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 158, 196
BstF5I GGATG 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 30, 253
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 170
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 53
CspAI ACCGGT 1 cut(s) 53
CviJI RGCY 7 cut(s) 44, 103, 107, 153, 180, 195, 235
CviKI_1 RGCY 7 cut(s) 44, 103, 107, 153, 180, 195, 235
DdeI CTNAG 2 cut(s) 158, 196
Eam1104I CTCTTC 2 cut(s) 33, 225
EarI CTCTTC 2 cut(s) 33, 225
Eco31I GGTCTC 2 cut(s) 30, 253
FaiI YATR 5 cut(s) 78, 120, 204, 239, 264
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 164, 196
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HapII CCGG 1 cut(s) 54
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 160
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 118, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 158, 196
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 67, 84, 89, 170, 177, 270
Lsp1109I GCAGC 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 49, 187
MboII GAAGA 4 cut(s) 20, 184, 242, 303
MluCI AATT 5 cut(s) 69, 92, 111, 256, 297
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 2 cut(s) 9, 82
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 49, 187
PciSI GCTCTTC 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PsiI TTATAA 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 154
SchI GAGTC 1 cut(s) 169
SetI ASST 5 cut(s) 46, 147, 237, 249, 289
SgrAI CRCCGGYG 1 cut(s) 53
Sse9I AATT 5 cut(s) 69, 92, 111, 256, 297
TasI AATT 5 cut(s) 69, 92, 111, 256, 297
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 2 cut(s) 49, 187
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 2 cut(s) 49, 187
TspDTI ATGAA 2 cut(s) 17, 150
TspRI CASTG 1 cut(s) 170
XapI RAATTY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.