Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Forward (+)

36083836 .. 36084523

Gene Structure 688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGTGTCTGAGACACTAAGGAATACGATTCCCAAGGCTGTCGTTCACTGTCAAGTCAGGGAGGGAAAAACATCATTGCTAAATAACTTCTATATACAAATAGGAAAGAGAGAGGGTAAGCAGGTAGGTCAGCTGCTTGACGAAGACCCAGCATTGATGGAGAGGAGGCTACAGTGTGCTAAAAGGCTTGAATCATACAAGTCAGCTAGGGATGAGGTTGATTATCTATCATGGGTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

80

Amino Acids

9.26

Weight (kDa)

8.52

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	1 - 74	1.7e-18	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	2 cut(s)	133, 206
AluI	AGCT	2 cut(s)	133, 206
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	5
BspMI	ACCTGC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	50, 174
BstDEI	CTNAG	2 cut(s)	9, 17
BstF5I	GGATG	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	46, 179
BveI	ACCTGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	5 cut(s)	38, 133, 169, 187, 206
CviKI_1	RGCY	5 cut(s)	38, 133, 169, 187, 206
DdeI	CTNAG	2 cut(s)	9, 17
Eco130I	CCWWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	234
FaiI	YATR	4 cut(s)	93, 95, 196, 232
FatI	CATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	134
GsaI	CCCAGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	234
HinfI	GANTC	2 cut(s)	28, 191
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	50, 174
HpyF3I	CTNAG	2 cut(s)	9, 17
Hsp92II	CATG	1 cut(s)	234
LpnPI	CCDG	3 cut(s)	43, 107, 162
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	207
MboII	GAAGA	1 cut(s)	155
MnlI	CCTC	5 cut(s)	55, 106, 156, 159, 208
MspA1I	CMGCKG	1 cut(s)	133
NlaIII	CATG	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	28, 191
PkrI	GCNGC	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	133
SatI	GCNGC	1 cut(s)	134
SetI	ASST	5 cut(s)	126, 130, 135, 208, 219
SfcI	CTRYAG	1 cut(s)	170
SgeI	CNNG	9 cut(s)	46, 65, 70, 134, 149, 161, 200, 211, 219
SspMI	CTAG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	50, 174
TfiI	GAWTC	2 cut(s)	28, 191
TscAI	CASTG	2 cut(s)	53, 179
TseI	GCWGC	1 cut(s)	133
TspRI	CASTG	2 cut(s)	53, 179
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.