Rh7DG407300
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
57071285 .. 57084038
12754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG407300.1

Sequence Viewer

Length: 372 bp
ATGCAGCATCATAATGTGAAAAATGTTGCAGCAGCAAAAGAAGAGAACAACAACAGCAGCAAAAGAAGAATAAATTACTATTGCTTTCATGCCGTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGAGACCTCGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAATGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTGAGGATATTGAAAAGGGGGGAAATCTGACACACTCACTTTTCGACAGATATAACGATTCCTACCTCCGGTGGGTTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

14.47

Weight (kDa)

6.43

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 354, 358
AgsI TTSAA 5 cut(s) 100, 124, 188, 269, 299
AluBI AGCT 3 cut(s) 106, 235, 283
AluI AGCT 3 cut(s) 106, 235, 283
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 5 cut(s) 4, 29, 32, 57, 232
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 253
AxyI CCTNAGG 1 cut(s) 288
BbvI GCAGC 5 cut(s) 16, 41, 44, 69, 244
BceAI ACGGC 1 cut(s) 77
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 236
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 5 cut(s) 5, 30, 33, 58, 233
BlsI GCNGC 5 cut(s) 6, 31, 34, 59, 234
BmsI GCATC 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 358
Bse21I CCTNAGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 354, 358
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 125, 279
BseXI GCAGC 5 cut(s) 16, 41, 44, 69, 244
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 354, 358
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 122
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 2 cut(s) 124, 280
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 36, 204
BstC8I GCNNGC 2 cut(s) 108, 281
BstDEI CTNAG 2 cut(s) 111, 288
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 254
BstV1I GCAGC 5 cut(s) 16, 41, 44, 69, 244
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 108, 281
CviAII CATG 1 cut(s) 89
CviJI RGCY 4 cut(s) 106, 110, 235, 283
CviKI_1 RGCY 4 cut(s) 106, 110, 235, 283
DdeI CTNAG 2 cut(s) 111, 288
Eam1104I CTCTTC 2 cut(s) 36, 204
EarI CTCTTC 2 cut(s) 36, 204
Eco31I GGTCTC 1 cut(s) 122
Eco81I CCTNAGG 1 cut(s) 288
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
FaeI CATG 1 cut(s) 92
FaiI YATR 5 cut(s) 12, 90, 230, 245, 339
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 5 cut(s) 5, 30, 33, 58, 233
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 5 cut(s) 5, 30, 33, 58, 233
FspBI CTAG 1 cut(s) 236
GluI GCNGC 5 cut(s) 5, 30, 33, 58, 233
HapII CCGG 1 cut(s) 355
Hin1II CATG 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 188, 344
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 114, 136, 315
Hpy188III TCNNGA 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 4, 29, 179, 232
HpyF3I CTNAG 2 cut(s) 111, 288
Hsp92II CATG 1 cut(s) 92
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 92, 179, 300, 368
Lsp1109I GCAGC 5 cut(s) 16, 41, 44, 69, 244
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 254
MboII GAAGA 3 cut(s) 53, 78, 221
MluCI AATT 3 cut(s) 73, 137, 269
MnlI CCTC 4 cut(s) 142, 269, 283, 362
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 140, 158
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 181
NlaIII CATG 1 cut(s) 92
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 188, 344
PkrI GCNGC 5 cut(s) 6, 31, 34, 59, 234
PspEI GGTNACC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 140, 158
SatI GCNGC 5 cut(s) 5, 30, 33, 58, 233
SetI ASST 6 cut(s) 108, 134, 237, 261, 285, 354
SfaNI GCATC 1 cut(s) 16
SgeI CNNG 9 cut(s) 101, 119, 145, 192, 206, 248, 292, 299, 367
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 3 cut(s) 73, 137, 269
SsiI CCGC 1 cut(s) 277
SspMI CTAG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 330
TasI AATT 3 cut(s) 73, 137, 269
TfiI GAWTC 2 cut(s) 188, 344
Tru1I TTAA 2 cut(s) 140, 158
Tru9I TTAA 2 cut(s) 140, 158
TseI GCWGC 5 cut(s) 4, 29, 32, 57, 232
TspDTI ATGAA 3 cut(s) 77, 218, 234
XapI RAATTY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.