Rroxscaffold_5G00337690
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000693
Physical Location & Seq
Reverse (-)
5838577 .. 5847755
9179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337690.1

Sequence Viewer

Length: 495 bp
ATGCCGGATTGTATGGAGGTGAATAGTAATTATTCCAATTCCCTTGGTTGTCTTGAAATCCTCCAAGCATGGTATTTTGATCATAGTATCCTTGATATTGGATGCTTGGACATGTCTTCATTGAATCACCAACCATGGAGCATATGGAACACACCTCGTAAGATTGATGCCAAATTGAAAAACAAAACAGAAATTGAAGTGTGGGATGTAACTGCAGCTGATCCTAAATTGCTGGAATTAAAGCAGTATCCCACTTTGAGAGTGGAAGTTGGGAATGCAAGATTCGAATTGCTAGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGGGAAATTTTTTGATAGCACAAGTAGTCTCTCTCCCGGCGTAGCTGGACTAATCCTTGCACAGCGGACGCATGAACCTTGGTGTTTAATCAACCTAGGTCCCTCAAATCTGCTGGCCACGAGGTGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

164

Amino Acids

18.64

Weight (kDa)

4.92

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 486
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 4 cut(s) 56, 124, 178, 197
AluBI AGCT 4 cut(s) 218, 334, 407, 492
AluI AGCT 4 cut(s) 218, 334, 407, 492
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 215, 331
ApoI RAATTY 1 cut(s) 368
AspA2I CCTAGG 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 2 cut(s) 364, 399
AsuHPI GGTGA 3 cut(s) 31, 119, 352
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 461
AvrII CCTAGG 1 cut(s) 457
BalI TGGCCA 1 cut(s) 479
BauI CACGAG 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 227, 343
BciVI GTATCC 2 cut(s) 98, 258
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 2 cut(s) 364, 399
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 4 cut(s) 293, 335, 458, 493
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 2 cut(s) 98, 258
BisI GCNGC 2 cut(s) 216, 332
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 2 cut(s) 217, 333
Bme1390I CCNGG 2 cut(s) 364, 399
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 2 cut(s) 364, 399
BmsI GCATC 2 cut(s) 92, 157
BpiI GAAGAC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 285
BpuMI CCSGG 2 cut(s) 364, 399
BsaJI CCNNGG 4 cut(s) 43, 134, 440, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 486
BseDI CCNNGG 4 cut(s) 43, 134, 440, 457
BseGI GGATG 3 cut(s) 107, 211, 306
BseLI CCNNNNNNNGG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 227, 343
BshFI GGCC 1 cut(s) 479
BsiSI CCGG 3 cut(s) 5, 363, 399
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 479
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 79, 220
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 463
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 285
BssECI CCNNGG 4 cut(s) 43, 134, 440, 457
BssMI GATC 2 cut(s) 79, 220
BssSI CACGAG 1 cut(s) 481
BssT1I CCWWGG 4 cut(s) 43, 134, 440, 457
Bst2BI CACGAG 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 477
BstDSI CCRYGG 1 cut(s) 134
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 3 cut(s) 107, 211, 306
BstKTI GATC 2 cut(s) 82, 223
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 79, 220
BstNSI RCATGY 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 362, 397
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 227, 343
BstV2I GAAGAC 1 cut(s) 108
BsuI GTATCC 2 cut(s) 98, 258
BsuRI GGCC 1 cut(s) 479
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 3 cut(s) 107, 211, 306
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 461
CseI GACGC 1 cut(s) 439
CviAII CATG 4 cut(s) 69, 112, 135, 434
CviJI RGCY 5 cut(s) 218, 334, 407, 479, 492
CviKI_1 RGCY 5 cut(s) 218, 334, 407, 479, 492
DpnI GATC 2 cut(s) 81, 222
DpnII GATC 2 cut(s) 79, 220
DraIII CACNNNGTG 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 4 cut(s) 43, 134, 440, 457
Eco47I GGWCC 1 cut(s) 461
Eco91I GGTNACC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 461
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 4 cut(s) 43, 134, 440, 457
ErhI CCWWGG 4 cut(s) 43, 134, 440, 457
FaeI CATG 4 cut(s) 72, 115, 138, 437
FaqI GGGAC 1 cut(s) 447
FatI CATG 4 cut(s) 68, 111, 134, 433
FauNDI CATATG 1 cut(s) 143
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 216, 332
FokI GGATG 3 cut(s) 114, 218, 313
Fsp4HI GCNGC 2 cut(s) 216, 332
FspBI CTAG 4 cut(s) 293, 335, 458, 493
GluI GCNGC 2 cut(s) 216, 332
HaeIII GGCC 1 cut(s) 479
HapII CCGG 3 cut(s) 5, 363, 399
HgaI GACGC 1 cut(s) 439
Hin1II CATG 4 cut(s) 72, 115, 138, 437
HinfI GANTC 2 cut(s) 124, 282
HpaII CCGG 3 cut(s) 5, 363, 399
HphI GGTGA 3 cut(s) 31, 119, 352
Hpy188III TCNNGA 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 215, 278, 331, 422
Hsp92II CATG 4 cut(s) 72, 115, 138, 437
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 220
LmnI GCTCC 2 cut(s) 138, 489
LpnPI CCDG 6 cut(s) 18, 218, 376, 393, 412, 461
Lsp1109I GCAGC 2 cut(s) 227, 343
LweI GCATC 2 cut(s) 92, 157
MaeI CTAG 4 cut(s) 293, 335, 458, 493
MaeIII GTNAC 2 cut(s) 208, 353
MalI GATC 2 cut(s) 81, 222
MboI GATC 2 cut(s) 79, 220
MboII GAAGA 2 cut(s) 108, 320
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 8 cut(s) 28, 37, 173, 192, 227, 236, 287, 368
MluNI TGGCCA 1 cut(s) 479
MnlI CCTC 6 cut(s) 10, 71, 165, 368, 475, 477
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 239, 449
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 218, 427
MspI CCGG 3 cut(s) 5, 363, 399
MspR9I CCNGG 2 cut(s) 364, 399
Mva1269I GAATGC 1 cut(s) 280
NciI CCSGG 2 cut(s) 364, 399
NcoI CCATGG 1 cut(s) 134
NdeI CATATG 1 cut(s) 143
NdeII GATC 2 cut(s) 79, 220
NlaIII CATG 4 cut(s) 72, 115, 138, 437
NlaIV GGNNCC 1 cut(s) 463
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 285
PciI ACATGT 1 cut(s) 111
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 124, 282
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 2 cut(s) 217, 333
PpuMI RGGWCCY 1 cut(s) 461
PscI ACATGT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 461
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 1 cut(s) 461
PspPPI RGGWCCY 1 cut(s) 461
PstI CTGCAG 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 239, 449
SatI GCNGC 2 cut(s) 216, 332
Sau3AI GATC 2 cut(s) 79, 220
Sau96I GGNCC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 364, 399
SfaNI GCATC 2 cut(s) 92, 157
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 461
Sse9I AATT 8 cut(s) 28, 37, 173, 192, 227, 236, 287, 368
SsiI CCGC 1 cut(s) 427
SspMI CTAG 4 cut(s) 293, 335, 458, 493
StyD4I CCNGG 2 cut(s) 362, 397
StyI CCWWGG 4 cut(s) 43, 134, 440, 457
TaqI TCGA 1 cut(s) 285
TasI AATT 8 cut(s) 28, 37, 173, 192, 227, 236, 287, 368
TfiI GAWTC 2 cut(s) 124, 282
Tru1I TTAA 2 cut(s) 239, 449
Tru9I TTAA 2 cut(s) 239, 449
TseI GCWGC 2 cut(s) 215, 331
TspDTI ATGAA 3 cut(s) 108, 317, 450
Van91I CCANNNNNTGG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 2 cut(s) 141, 259
XmaJI CCTAGG 1 cut(s) 457
XspI CTAG 4 cut(s) 293, 335, 458, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.