Rw1G023140
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000693
Physical Location & Seq
Reverse (-)
48852644 .. 48856469
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023140.1

Sequence Viewer

Length: 510 bp
ATGACTGGAGGTACTAGTGGAGGAATGGAAGCTAGATCAAAACAATGGGATAATAAAAAAGTTCATGCCATATTGAAGCAGTATCCCACTTTAAGAGTGGTAGATGGGAATGCAGCCTTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGAAAGCACAAGTGAGGATAACCAAGGAGGAATATGTACCGGTTGATGGAAGGTCCTCAGCTTTGGTGGAGTTTCTCCGGCAAGATATTGTCAATGGAAATTTGGACAGAGTGAAAGAATGTGTGGCCATAGACAAGAATATTGGCGGAGAAGACGGCAGAGTTTCACTCATCAACACTATTGGCCGGGAAGAAAAGACACCTATTTTCATTGCTCTAGAGTACTACAAGAAGGCCAAGGAATGCTTCCATTACTTGATGGATAATGGTGTTTCTATCGTAAACTCGAGCAAAGAAGGTGACGAGTTAGCCATGGACTGTGCTTTGTATTTCGAGCGGTATATTTTCCAAACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

169

Amino Acids

19.17

Weight (kDa)

6.18

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 487
AciI CCGC 2 cut(s) 297, 487
AcoI YGGCCR 2 cut(s) 276, 334
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 3 cut(s) 13, 189, 374
AfiI CCNNNNNNNGG 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 76, 122
AhlI ACTAGT 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 2 cut(s) 32, 212
AluI AGCT 2 cut(s) 32, 212
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 3 cut(s) 276, 334, 384
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 250
AsiGI ACCGGT 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 125
BccI CCATC 3 cut(s) 98, 191, 403
BceAI ACGGC 1 cut(s) 322
BciVI GTATCC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 338
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 3 cut(s) 15, 33, 368
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 303, 335
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 174, 387, 462
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 174, 387, 462
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 3 cut(s) 278, 336, 386
BshTI ACCGGT 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 3 cut(s) 191, 229, 337
BslI CCNNNNNNNGG 1 cut(s) 197
BsmI GAATGC 2 cut(s) 115, 398
BsnI GGCC 3 cut(s) 278, 336, 386
BsoBI CYCGRG 1 cut(s) 436
Bsp143I GATC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 2 cut(s) 297, 487
BspANI GGCC 3 cut(s) 278, 336, 386
BspCNI CTCAG 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 174, 387, 462
BssMI GATC 1 cut(s) 35
BssT1I CCWWGG 3 cut(s) 174, 387, 462
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 309
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 3 cut(s) 278, 336, 386
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 3 cut(s) 12, 188, 373
CspAI ACCGGT 1 cut(s) 190
CviAII CATG 2 cut(s) 65, 463
CviJI RGCY 7 cut(s) 32, 116, 212, 278, 336, 386, 461
CviKI_1 RGCY 7 cut(s) 32, 116, 212, 278, 336, 386, 461
CviQI GTAC 3 cut(s) 12, 188, 373
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
EaeI YGGCCR 2 cut(s) 276, 334
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 312
Eco130I CCWWGG 3 cut(s) 174, 387, 462
Eco47I GGWCC 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 204
EcoT14I CCWWGG 3 cut(s) 174, 387, 462
ErhI CCWWGG 3 cut(s) 174, 387, 462
FaeI CATG 2 cut(s) 68, 466
FaiI YATR 6 cut(s) 66, 71, 186, 281, 464, 492
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FatI CATG 2 cut(s) 64, 462
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 3 cut(s) 15, 33, 368
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 3 cut(s) 278, 336, 386
HapII CCGG 3 cut(s) 191, 229, 337
Hin1II CATG 2 cut(s) 68, 466
HinfI GANTC 1 cut(s) 122
HpaII CCGG 3 cut(s) 191, 229, 337
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 433
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 195, 376, 440
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 2 cut(s) 68, 466
Kzo9I GATC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 113, 204, 242, 350
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 3 cut(s) 15, 33, 368
MaeIII GTNAC 1 cut(s) 449
MalI GATC 1 cut(s) 37
MbiI CCGCTC 1 cut(s) 487
MboI GATC 1 cut(s) 35
MboII GAAGA 3 cut(s) 155, 314, 353
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 278
MnlI CCTC 4 cut(s) 14, 159, 172, 217
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 3 cut(s) 191, 229, 337
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 2 cut(s) 115, 398
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 462
NdeII GATC 1 cut(s) 35
NlaIII CATG 2 cut(s) 68, 466
NmuCI GTSAC 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 436
PctI GAATGC 2 cut(s) 115, 398
PfeI GAWTC 1 cut(s) 122
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
PspPI GGNCC 1 cut(s) 204
PspPPI RGGWCCY 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 436
RsaI GTAC 3 cut(s) 13, 189, 374
RsaNI GTAC 3 cut(s) 12, 188, 373
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 338
SetI ASST 6 cut(s) 13, 34, 206, 214, 355, 451
Sfr274I CTCGAG 1 cut(s) 436
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 1 cut(s) 250
SsiI CCGC 2 cut(s) 297, 487
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 15, 33, 368
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 3 cut(s) 174, 387, 462
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 437, 483
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 3 cut(s) 53, 152, 349
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 250
XbaI TCTAGA 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 436
XspI CTAG 3 cut(s) 15, 33, 368
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.