Rh1AG018200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000693
Physical Location & Seq
Reverse (-)
3138425 .. 3153002
14578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG018200.1

Sequence Viewer

Length: 465 bp
ATGGATTTGGGAGCAAATGCTGGAGTGGAGGCCAAAGATTGCATCAAGGTCAAGGATATGGCATTCAAGGCCTCGGGACCCTACAAAAACTGCAAGCCGTGTTCGAGGCTGTGTGGCGACCATCGGAACGGGAACTGTTCGGACTCTGATATGTCGGCAAATTGGGTGTACGGGGAGAGGTCTGACGGAGAAGCCTTTCTTGGTCGTAATCCTTTGCTCATGGATCTCTTGACCCGCAGAAAATCTCCTATCACTGGTCTGTTCATTATGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACGTCACCGTTGAATTTTTCCGCAAGTTTCCTCAGGATATTGAAAAGGGGGGGGCATATGTATCAACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

154

Amino Acids

17.24

Weight (kDa)

5.92

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 235, 412
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 404
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 4 cut(s) 67, 323, 404, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
AlwI GGATC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 2 cut(s) 30, 69
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 73
AvaII GGWCC 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 423
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 129
BceAI ACGGC 1 cut(s) 82
BciVI GTATCC 1 cut(s) 294
BfaI CTAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 78, 79
BmsI GCATC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 342
BseJI GATNNNNATC 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 32, 71
BsiHKCI CYCGRG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 2 cut(s) 62, 316
BsnI GGCC 2 cut(s) 32, 71
BsoBI CYCGRG 1 cut(s) 73
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 2 cut(s) 235, 412
BspANI GGCC 2 cut(s) 32, 71
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 78, 79
BspPI GGATC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 137, 400
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 423
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 2 cut(s) 32, 71
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 220
CviJI RGCY 6 cut(s) 32, 71, 97, 109, 194, 370
CviKI_1 RGCY 6 cut(s) 32, 71, 97, 109, 194, 370
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 423
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 1 cut(s) 223
FaiI YATR 9 cut(s) 59, 152, 221, 269, 365, 380, 448, 450, 463
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 371
GluI GCNGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 32, 71
Hin1II CATG 1 cut(s) 223
HinfI GANTC 2 cut(s) 143, 323
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 4 cut(s) 126, 142, 148, 184
Hpy188III TCNNGA 3 cut(s) 75, 229, 425
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 137, 400
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 42, 93, 314, 367, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 223
KflI GGGWCCC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 6, 240, 314, 410
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 389, 394
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 356
MflI RGATCY 1 cut(s) 223
MluCI AATT 3 cut(s) 160, 272, 404
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 5 cut(s) 22, 82, 99, 171, 432
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 275, 293
Mva1269I GAATGC 2 cut(s) 62, 316
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeI CATATG 1 cut(s) 448
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 78, 79
NmuCI GTSAC 1 cut(s) 394
PceI AGGCCT 1 cut(s) 71
PctI GAATGC 2 cut(s) 62, 316
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 78, 79
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 275, 293
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 137
SetI ASST 4 cut(s) 51, 182, 372, 396
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 1 cut(s) 77
Sse9I AATT 3 cut(s) 160, 272, 404
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 235, 412
SspMI CTAG 1 cut(s) 371
StuI AGGCCT 1 cut(s) 71
TaaI ACNGT 2 cut(s) 137, 400
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 104
TasI AATT 3 cut(s) 160, 272, 404
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 275, 293
Tru9I TTAA 2 cut(s) 275, 293
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 253, 353
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.