Rh2CG341900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000693
Physical Location & Seq
Reverse (-)
45887324 .. 45890164
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG341900.1

Sequence Viewer

Length: 534 bp
ATGCCATGGTTGTTCAAATGCAGGTCTTTAGCTACTCAGATCTACTTAGGTCTTTGGAAGCAAATCAAAGCCGCTCTAGCAGGAACTCATAGCTCTCTCAGCTCCAGTGTTTCTATCATCCCAAGTCCCACTATCCAGGTAACAATCACTGACATTTTCTTCAAAATTCAATCATCCCAAAAGGATTTATTAAAAGATGGTGTAGAGGGTCTGAAACCAAATGCAAGAGGGCCTGGTCTTGTCACTTTTGGGTCTTTGTCACCTCTAGTTATATTGCTGGTATATAATGTTCTAGCAATTGAAAAGTTTTGTAAGTCTTTGATATCAGGTGCTCTATTGGACTTGAAAGAATGTATAATTCATGGAATAGGAACTATGGTGGCAAGGTATGGAATACTTCCCCAGATGAGCAAAACCGCCTCAGAGCTCAAGTCTTTAACAACCCATGTACTCCATACTCAAAAAGCAAGCTTCTTTACTACAACAGTTGCAGATCGTGAAGAAGAATCACAAAACCCAAAGAGACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.36

Weight (kDa)

9.54

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 2 cut(s) 72, 417
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 450
AgsI TTSAA 5 cut(s) 16, 163, 170, 302, 346
AjnI CCWGG 2 cut(s) 135, 232
AluBI AGCT 5 cut(s) 32, 93, 102, 427, 471
AluI AGCT 5 cut(s) 32, 93, 102, 427, 471
Alw21I GWGCWC 2 cut(s) 334, 429
Alw26I GTCTC 1 cut(s) 517
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 334, 429
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 2 cut(s) 137, 234
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 3 cut(s) 77, 266, 293
BfuAI ACCTGC 1 cut(s) 12
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 137, 234
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 137, 234
BpmI CTGGAG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 137, 234
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 2 cut(s) 117, 173
BseMII CTCAG 3 cut(s) 50, 112, 435
BseNI ACTGG 1 cut(s) 105
BshFI GGCC 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 334, 429
BslFI GGGAC 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 1 cut(s) 232
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 334, 429
Bsp143I GATC 2 cut(s) 39, 493
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 2 cut(s) 72, 417
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 3 cut(s) 49, 111, 434
BspMI ACCTGC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 39, 493
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 137, 234
Bst4CI ACNGT 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 4 cut(s) 36, 46, 98, 421
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 2 cut(s) 117, 173
BstKTI GATC 2 cut(s) 42, 496
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 2 cut(s) 39, 493
BstMWI GCNNNNNNNGC 2 cut(s) 77, 99
BstNI CCWGG 2 cut(s) 137, 234
BstSCI CCNGG 2 cut(s) 135, 232
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 117, 173
BtsIMutI CAGTG 2 cut(s) 112, 147
BveI ACCTGC 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 449
CviAII CATG 3 cut(s) 6, 362, 446
CviJI RGCY 7 cut(s) 32, 71, 93, 102, 232, 427, 471
CviKI_1 RGCY 7 cut(s) 32, 71, 93, 102, 232, 427, 471
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 4 cut(s) 36, 46, 98, 421
DpnI GATC 2 cut(s) 41, 495
DpnII GATC 2 cut(s) 39, 493
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 517
Eco32I GATATC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 135, 232
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 3 cut(s) 9, 365, 449
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 5, 361, 445
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 104, 160
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 77, 266, 293
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 3 cut(s) 9, 365, 449
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 1 cut(s) 506
HphI GGTGA 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 39, 213, 424
Hpy188III TCNNGA 1 cut(s) 497
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 21, 224, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 99
HpyF3I CTNAG 4 cut(s) 36, 46, 98, 421
Hsp92II CATG 3 cut(s) 9, 365, 449
Kzo9I GATC 2 cut(s) 39, 493
LmnI GCTCC 1 cut(s) 107
MaeI CTAG 3 cut(s) 77, 266, 293
MaeIII GTNAC 3 cut(s) 139, 241, 258
MalI GATC 2 cut(s) 41, 495
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 39, 493
MboII GAAGA 3 cut(s) 151, 512, 515
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 334, 429
MluCI AATT 3 cut(s) 165, 297, 357
MnlI CCTC 4 cut(s) 199, 221, 273, 430
MseI TTAA 2 cut(s) 191, 437
MspR9I CCNGG 2 cut(s) 137, 234
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 2 cut(s) 137, 234
MwoI GCNNNNNNNGC 2 cut(s) 77, 99
NcoI CCATGG 1 cut(s) 5
NdeII GATC 2 cut(s) 39, 493
NlaIII CATG 3 cut(s) 9, 365, 449
NmuCI GTSAC 2 cut(s) 241, 258
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 135, 232
PspGI CCWGG 2 cut(s) 135, 232
PspPI GGNCC 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 191, 437
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 39, 493
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 137, 234
SduI GDGCHC 2 cut(s) 334, 429
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 3 cut(s) 165, 297, 357
SsiI CCGC 2 cut(s) 72, 417
SspMI CTAG 3 cut(s) 77, 266, 293
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 135, 232
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 487
TasI AATT 3 cut(s) 165, 297, 357
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 191, 437
Tru9I TTAA 2 cut(s) 191, 437
TscAI CASTG 2 cut(s) 112, 154
TseFI GTSAC 2 cut(s) 241, 258
Tsp45I GTSAC 2 cut(s) 241, 258
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 2 cut(s) 112, 154
XapI RAATTY 1 cut(s) 165
XspI CTAG 3 cut(s) 77, 266, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.