RLG00000007555
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000693
Physical Location & Seq
Reverse (-)
18070163 .. 18072181
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007555

Sequence Viewer

Length: 351 bp
ATGGACTGTGCAGATTCTATCCCTTTCCCCGAAAGGGCCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGGAGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCAGGAATTAAAGCTGTATCCCACTTTAAGAGTGGAGGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAATCAACTATGCAACTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGAAATCCGACACACTCACTTTTCGACAGATATAATGATTCCTACCTCCGGCGGGTTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

117

Amino Acids

13.4

Weight (kDa)

4.7

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 256, 337
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 248
AfiI CCNNNNNNNGG 4 cut(s) 34, 76, 333, 337
AgsI TTSAA 3 cut(s) 167, 248, 278
AhlI ACTAGT 1 cut(s) 214
AluBI AGCT 3 cut(s) 98, 124, 262
AluI AGCT 3 cut(s) 98, 124, 262
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 267
BbvI GCAGC 1 cut(s) 107
BciVI GTATCC 1 cut(s) 138
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 93
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 166
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 76, 333, 337
Bse21I CCTNAGG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 166
BseGI GGATG 2 cut(s) 91, 186
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 4 cut(s) 34, 76, 333, 337
BseMII CTCAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 4 cut(s) 34, 76, 333, 337
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 256, 337
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 95
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 8, 244
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 91, 186
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 91, 186
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 38, 98, 124, 262
CviKI_1 RGCY 4 cut(s) 38, 98, 124, 262
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 58
Eco81I CCTNAGG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 58
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 209, 224, 318
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 98, 193
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 334
Hin1II CATG 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 4 cut(s) 14, 167, 200, 323
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 8, 244
HpyCH4V TGCA 6 cut(s) 11, 89, 95, 112, 158, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 1 cut(s) 43
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 98, 158, 254, 347
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 200
MluCI AATT 3 cut(s) 107, 116, 248
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 6 cut(s) 70, 71, 139, 248, 276, 341
MseI TTAA 2 cut(s) 119, 137
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 43
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 4 cut(s) 14, 167, 200, 323
PkrI GCNGC 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 119, 137
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 36
SetI ASST 8 cut(s) 72, 81, 100, 126, 150, 240, 264, 333
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 3 cut(s) 107, 116, 248
SsiI CCGC 2 cut(s) 256, 337
SspMI CTAG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 8, 244
TaqI TCGA 1 cut(s) 309
TasI AATT 3 cut(s) 107, 116, 248
TfiI GAWTC 4 cut(s) 14, 167, 200, 323
Tru1I TTAA 2 cut(s) 119, 137
Tru9I TTAA 2 cut(s) 119, 137
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.