Rh4DG023600
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000693
Physical Location & Seq
Reverse (-)
3810516 .. 3811875
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG023600.1

Sequence Viewer

Length: 333 bp
ATGCAGGTCAGTACTATCTCACCCCTCGCCAGACTCAAAGCCATCTACAGTGAAGCCCCACTTCCCCAATCGGTTCATGCCGTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCTCTGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGGTATTGAAAAGGGGGGAAATCCGACACACTCACTTTTCGACAGATCGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

110

Amino Acids

12.4

Weight (kDa)

6.73

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 23 - 85 3.2e-06 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 5 cut(s) 88, 112, 176, 257, 287
AluBI AGCT 3 cut(s) 94, 223, 271
AluI AGCT 3 cut(s) 94, 223, 271
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 12, 241
AxyI CCTNAGG 1 cut(s) 276
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 65
BciVI GTATCC 1 cut(s) 147
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 46
BfuI GTATCC 1 cut(s) 147
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
BmcAI AGTACT 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 175
Bse21I CCTNAGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 326
BseGI GGATG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 175
BseMII CTCAG 2 cut(s) 113, 290
BseXI GCAGC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 326
BsmI GAATGC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 323
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 112, 289
BspDI ATCGAT 1 cut(s) 326
BssMI GATC 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 50, 253
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 96, 269
BstDEI CTNAG 2 cut(s) 99, 276
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 276
BsuI GTATCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 326
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 96, 269
ClaI ATCGAT 1 cut(s) 326
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 77
CviJI RGCY 6 cut(s) 41, 56, 94, 98, 223, 271
CviKI_1 RGCY 6 cut(s) 41, 56, 94, 98, 223, 271
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 99, 276
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
FaeI CATG 1 cut(s) 80
FaiI YATR 4 cut(s) 78, 218, 233, 331
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 224
GluI GCNGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 33, 176
HphI GGTGA 2 cut(s) 12, 241
Hpy188I TCNGA 3 cut(s) 102, 124, 303
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 50, 253
HpyCH4V TGCA 3 cut(s) 4, 167, 220
HpyF3I CTNAG 2 cut(s) 99, 276
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 323
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 43, 80, 167, 263
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 1 cut(s) 209
MluCI AATT 2 cut(s) 125, 257
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 4 cut(s) 35, 130, 257, 285
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 2 cut(s) 128, 146
Mva1269I GAATGC 1 cut(s) 169
NdeII GATC 1 cut(s) 323
NlaIII CATG 1 cut(s) 80
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 242
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 128, 146
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 323
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 27
SetI ASST 6 cut(s) 9, 96, 122, 225, 249, 273
SfcI CTRYAG 1 cut(s) 46
Sse9I AATT 2 cut(s) 125, 257
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 50, 253
TaqI TCGA 2 cut(s) 318, 326
TasI AATT 2 cut(s) 125, 257
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 128, 146
Tru9I TTAA 2 cut(s) 128, 146
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 65, 206
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.