Rh4DG278700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000693
Physical Location & Seq
Reverse (-)
49900932 .. 49901234
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG278700.1

Sequence Viewer

Length: 303 bp
ATGTTGGTGAACGAGAACGGCGACGGTGCTGTGAACGAGAAAGAAGAAGACCCGATCTTCTCCTTCAACTATGACGAGGGCGTTGTGAACGAGAAAGAAGAAGACCCGATCCAGGAACTCACTCTCGTCCGTCGCTGCCCTACACGGCTTCATCTCCTCCATCGGACCCTCAGTCGCCGCCCCGCCCTGTGGTGCCCCATGGCCGTCTCGACTGCATTGACTCAGGCGCCGACCTATGTGGCCTTCTTCCTTATCGAGTCTACCTTCTTCCTAGTACTTCGATCGGTTCAAAATGTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

4.9

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 192, 226
AccI GTMKAC 1 cut(s) 260
AciI CCGC 2 cut(s) 178, 183
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 112, 189
AgsI TTSAA 2 cut(s) 67, 290
AhdI GACNNNNNGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 103
AoxI GGCC 2 cut(s) 201, 240
ApeKI GCWGC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 2 cut(s) 192, 226
BbsI GAAGAC 2 cut(s) 54, 108
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 168
BceAI ACGGC 3 cut(s) 34, 161, 188
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 2 cut(s) 272, 301
BfoI RGCGCY 1 cut(s) 230
BisI GCNGC 2 cut(s) 136, 178
BlsI GCNGC 2 cut(s) 137, 179
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 165
BmeRI GACNNNNNGTC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 3 cut(s) 167, 194, 228
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 2 cut(s) 54, 108
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 189
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 112, 189
BseMII CTCAG 2 cut(s) 184, 236
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 203, 242
BshNI GGYRCC 2 cut(s) 192, 226
BsiEI CGRYCG 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 112, 189
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsnI GGCC 2 cut(s) 203, 242
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 54, 108, 281
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 178, 183
BspANI GGCC 2 cut(s) 203, 242
BspCNI CTCAG 2 cut(s) 183, 235
BspLI GGNNCC 3 cut(s) 167, 194, 228
BspPI GGATC 1 cut(s) 103
BspT107I GGYRCC 2 cut(s) 192, 226
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 54, 108, 281
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 170, 222
BstDSI CCRYGG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 57, 111, 284
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 3 cut(s) 54, 108, 281
BstMCI CGRYCG 1 cut(s) 284
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 54, 108
BsuRI GGCC 2 cut(s) 203, 242
BtgI CCRYGG 1 cut(s) 198
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 199
CviJI RGCY 3 cut(s) 148, 203, 242
CviKI_1 RGCY 3 cut(s) 148, 203, 242
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 2 cut(s) 170, 222
DinI GGCGCC 1 cut(s) 228
DpnI GATC 3 cut(s) 56, 110, 283
DpnII GATC 3 cut(s) 54, 108, 281
DriI GACNNNNNGTC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 198
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 1 cut(s) 202
FaiI YATR 3 cut(s) 72, 200, 237
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 190
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 136, 178
Fsp4HI GCNGC 2 cut(s) 136, 178
FspBI CTAG 2 cut(s) 272, 301
GlaI GCGC 1 cut(s) 228
GluI GCNGC 2 cut(s) 136, 178
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 2 cut(s) 203, 242
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 220, 257
HpaI GTTAAC 1 cut(s) 298
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 5 cut(s) 10, 34, 88, 261, 298
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 5 cut(s) 10, 34, 88, 261, 298
Hpy99I CGWCG 2 cut(s) 26, 135
HpyAV CCTTC 3 cut(s) 73, 253, 274
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 215
HpyF3I CTNAG 2 cut(s) 170, 222
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 227
KasI GGCGCC 1 cut(s) 226
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 54, 108, 281
LpnPI CCDG 4 cut(s) 98, 125, 200, 209
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 2 cut(s) 272, 301
MalI GATC 3 cut(s) 56, 110, 283
MboI GATC 3 cut(s) 54, 108, 281
MboII GAAGA 7 cut(s) 49, 56, 59, 110, 113, 238, 259
MhlI GDGCHC 1 cut(s) 197
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 2 cut(s) 214, 266
MnlI CCTC 3 cut(s) 70, 167, 179
MseI TTAA 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
NarI GGCGCC 1 cut(s) 227
NcoI CCATGG 1 cut(s) 198
NdeII GATC 3 cut(s) 54, 108, 281
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 3 cut(s) 167, 194, 228
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 137, 179
Ple19I CGATCG 1 cut(s) 284
PleI GAGTC 2 cut(s) 214, 265
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 2 cut(s) 214, 265
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 167, 194, 228
PspPI GGNCC 1 cut(s) 165
PvuI CGATCG 1 cut(s) 284
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 136, 178
Sau3AI GATC 3 cut(s) 54, 108, 281
Sau96I GGNCC 1 cut(s) 165
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 2 cut(s) 214, 266
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 197
SetI ASST 2 cut(s) 236, 266
SfoI GGCGCC 1 cut(s) 228
SinI GGWCC 1 cut(s) 165
SsiI CCGC 2 cut(s) 178, 183
SspDI GGCGCC 1 cut(s) 226
SspMI CTAG 2 cut(s) 272, 301
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 209, 255, 280
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 2 cut(s) 272, 301
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.