Rroxscaffold_2G00147240
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
85153107 .. 85157022
3916 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00147240.1

Sequence Viewer

Length: 180 bp
ATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCACAAGCTTCCTCAGGATATTGAAAAGGGGGACATATGTATCAGCTGCATAGTTGGACATATGTATCAGCTGCATTGTGTGGTTACGTATGTATCATCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.81

Weight (kDa)

4.84

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 68
AgsI TTSAA 2 cut(s) 68, 98
AluBI AGCT 4 cut(s) 34, 82, 120, 145
AluI AGCT 4 cut(s) 34, 82, 120, 145
ApeKI GCWGC 3 cut(s) 31, 120, 145
ApoI RAATTY 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 87
BaeI ACNNNNGTAYC 5 cut(s) 97, 122, 130, 150, 155
BbvI GCAGC 3 cut(s) 43, 107, 132
BfaI CTAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 32, 121, 146
BlsI GCNGC 3 cut(s) 33, 122, 147
BsaAI YACGTR 1 cut(s) 162
Bse21I CCTNAGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 43, 107, 132
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 87
BstEII GGTNACC 1 cut(s) 53
BstPI GGTNACC 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 43, 107, 132
Bsu36I CCTNAGG 1 cut(s) 87
CviJI RGCY 4 cut(s) 34, 82, 120, 145
CviKI_1 RGCY 4 cut(s) 34, 82, 120, 145
DdeI CTNAG 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco105I TACGTA 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 53
FaiI YATR 8 cut(s) 29, 44, 110, 112, 125, 135, 137, 165
FaqI GGGAC 1 cut(s) 119
FauNDI CATATG 2 cut(s) 110, 135
Fnu4HI GCNGC 3 cut(s) 32, 121, 146
Fsp4HI GCNGC 3 cut(s) 32, 121, 146
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 32, 121, 146
HindIII AAGCTT 1 cut(s) 80
HphI GGTGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 31, 123, 148
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 161
LpnPI CCDG 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 43, 107, 132
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 53, 157
MboII GAAGA 1 cut(s) 20
MluCI AATT 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 2 cut(s) 68, 96
MspA1I CMGCKG 2 cut(s) 120, 145
NdeI CATATG 2 cut(s) 110, 135
PkrI GCNGC 3 cut(s) 33, 122, 147
Ppu21I YACGTR 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 53
PvuII CAGCTG 2 cut(s) 120, 145
SatI GCNGC 3 cut(s) 32, 121, 146
SetI ASST 6 cut(s) 36, 60, 84, 122, 147, 164
SgeI CNNG 4 cut(s) 28, 47, 91, 101
SnaBI TACGTA 1 cut(s) 162
Sse9I AATT 1 cut(s) 68
SspMI CTAG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 164
TasI AATT 1 cut(s) 68
TseI GCWGC 3 cut(s) 31, 120, 145
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 68
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.