Rh2DG115800
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
9524647 .. 9526538
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG115800.1

Sequence Viewer

Length: 276 bp
ATGCGAGCTTTTGCACCAGCCTGTCCTGGGTTTCGTAAGGAATTAAAGCAGTATCCCACTTTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGACATATGTATCAGCTGCATAGTTGGTTACGTATTGAAAAGGGGGCACATATGTATCAGCTGCACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.71

Weight (kDa)

6.9

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 4 cut(s) 86, 167, 197, 242
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 5 cut(s) 8, 133, 181, 220, 265
AluI AGCT 5 cut(s) 8, 133, 181, 220, 265
ApeKI GCWGC 3 cut(s) 130, 220, 265
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 253
BaeI ACNNNNGTAYC 4 cut(s) 197, 230, 242, 275
BbvI GCAGC 3 cut(s) 142, 207, 252
BciT130I CCWGG 1 cut(s) 27
BciVI GTATCC 1 cut(s) 63
BfaI CTAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 63
BisI GCNGC 3 cut(s) 131, 221, 266
BlsI GCNGC 3 cut(s) 132, 222, 267
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse21I CCTNAGG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 85
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 3 cut(s) 142, 207, 252
BsgI GTGCAG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 253
BspACI CCGC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 163, 272
Bst6I CTCTTC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 6, 179
BstDEI CTNAG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 105
BstNI CCWGG 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 253
BstSNI TACGTA 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 142, 207, 252
Bsu36I CCTNAGG 1 cut(s) 186
BsuI GTATCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 6, 179
CviJI RGCY 6 cut(s) 8, 20, 133, 181, 220, 265
CviKI_1 RGCY 6 cut(s) 8, 20, 133, 181, 220, 265
DdeI CTNAG 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco105I TACGTA 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 25
FaiI YATR 7 cut(s) 128, 143, 210, 212, 225, 255, 257
FaqI GGGAC 1 cut(s) 219
FauNDI CATATG 2 cut(s) 210, 255
Fnu4HI GCNGC 3 cut(s) 131, 221, 266
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 131, 221, 266
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 131, 221, 266
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 163, 272
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 5 cut(s) 14, 77, 130, 223, 268
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 235
LpnPI CCDG 6 cut(s) 12, 30, 34, 39, 77, 173
Lsp1109I GCAGC 3 cut(s) 142, 207, 252
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 152, 231
MboII GAAGA 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 41, 167
MnlI CCTC 2 cut(s) 167, 195
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 2 cut(s) 220, 265
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 27
NdeI CATATG 2 cut(s) 210, 255
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 132, 222, 267
Ppu21I YACGTR 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 25
PvuII CAGCTG 2 cut(s) 220, 265
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 3 cut(s) 131, 221, 266
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 10, 135, 159, 183, 222, 238, 267
SnaBI TACGTA 1 cut(s) 236
Sse9I AATT 2 cut(s) 41, 167
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 163, 272
TaiI ACGT 1 cut(s) 238
TasI AATT 2 cut(s) 41, 167
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseI GCWGC 3 cut(s) 130, 220, 265
TspDTI ATGAA 1 cut(s) 116
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.