Rh7AG172300
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
14932265 .. 14945844
13580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG172300.1

Sequence Viewer

Length: 315 bp
ATGTCACAAGCTATGGCTATGTACGGATTTGTTTATGAGTGTTACAACTCATGCATGGAAGGCATCTATAAAATAGCAAAGATAAAGGTTAGATTGGGAAGCATTTTTACGATATCGGCCTATGTCAACCACTTTCATCCACTTCCACCTGTGGTCTCCATGGAACTGTGTTTACCCGAGAAAATGTTGAAGGATCTGATGAGAGTGGTAGTCAAGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.03

Weight (kDa)

8.44

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 201
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 2 cut(s) 190, 269
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 91, 123
BciVI GTATCC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 176
BmsI GCATC 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 136, 288
BseJI GATNNNNATC 1 cut(s) 268
BshFI GGCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 176
Bsp143I GATC 1 cut(s) 193
Bsp19I CCATGG 1 cut(s) 159
BspANI GGCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 136, 288
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 136, 288
Csp6I GTAC 1 cut(s) 22
CviAII CATG 3 cut(s) 51, 55, 160
CviJI RGCY 3 cut(s) 11, 17, 119
CviKI_1 RGCY 3 cut(s) 11, 17, 119
CviQI GTAC 1 cut(s) 22
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 160
Eco32I GATATC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 176
EcoRV GATATC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 54, 58, 163
FaiI YATR 9 cut(s) 14, 20, 36, 52, 56, 69, 123, 161, 311
FatI CATG 3 cut(s) 50, 54, 159
FokI GGATG 2 cut(s) 123, 295
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 3 cut(s) 54, 58, 163
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 127, 173
Hpy188I TCNGA 1 cut(s) 198
Hpy8I GTNNAC 2 cut(s) 127, 173
HpyAV CCTTC 2 cut(s) 53, 184
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 54, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 54, 58, 163
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 162, 260
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 3, 41
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 302
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 56
MseI TTAA 2 cut(s) 221, 239
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 159
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 54, 58, 163
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 56
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 269
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 221, 239
Sau3AI GATC 1 cut(s) 193
SetI ASST 3 cut(s) 13, 90, 151
SfaNI GCATC 1 cut(s) 72
Sse9I AATT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 168
TasI AATT 1 cut(s) 218
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 221, 239
Tru9I TTAA 2 cut(s) 221, 239
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 125, 299
TspGWI ACGGA 1 cut(s) 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.