RLG00000018106
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000693
Physical Location & Seq
Forward (+)
25355437 .. 25358783
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018106

Sequence Viewer

Length: 576 bp
ATGGCAGAGGTGGTAGAGAAGGTTTCAGCAGCGGAGGAAGTTCCGGTGTCGTGGCTCCAGCGTCGACTCAAGCCTTTCCAGTCGTCGACCTCTGATCAATTCGAGTCGTCTAGTTTTCACTTCAACGACACACAGCCTGGCTCGGGCTTTCGCTGCCACTGCCGAGCAGGCAATCGACAACGGGGCTCTTGCCGGACATTTACAGGTGGGCCCTTAAAACGTTTGACTGGGTCGAGGAGCCTCCCCAAGTTGACTAGCTGGCGAGAAAGGCCAGATTCTATCCCTTTCCCCGAAAGGAGCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGAAGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGTGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCATTGAATTTTTCCACAAGCTTCCTCAGGATATTGAAAAGCGGGGAAATCCGACACACTCACTTTTCGACATATATAACGATTCCTACCTCCGGCGGGTTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

192

Amino Acids

22.02

Weight (kDa)

8.61

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 64, 86
AciI CCGC 3 cut(s) 32, 508, 562
AclI AACGTT 1 cut(s) 220
AcsI RAATTY 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 143, 337, 558, 562
AgsI TTSAA 4 cut(s) 124, 392, 473, 503
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 258, 439, 487
AluI AGCT 3 cut(s) 258, 439, 487
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 2 cut(s) 209, 269
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 29, 153, 436
ApoI RAATTY 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 209, 210
AsuHPI GGTGA 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 492
BaeGI GKGCMC 1 cut(s) 213
BanII GRGCYC 2 cut(s) 188, 213
BbvI GCAGC 3 cut(s) 41, 140, 448
BciT130I CCWGG 1 cut(s) 138
BciVI GTATCC 1 cut(s) 363
BclI TGATCA 1 cut(s) 94
BfaI CTAG 3 cut(s) 111, 255, 440
BfuI GTATCC 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 3 cut(s) 30, 154, 437
BlsI GCNGC 3 cut(s) 31, 155, 438
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 209, 210
BmiI GGNNCC 3 cut(s) 56, 211, 239
BmrFI CCNGG 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 391
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 337, 558, 562
Bse1I ACTGG 2 cut(s) 79, 232
Bse21I CCTNAGG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 391
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 411
BseJI GATNNNNATC 1 cut(s) 391
BseLI CCNNNNNNNGG 4 cut(s) 143, 337, 558, 562
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 2 cut(s) 79, 232
BseRI GAGGAG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 3 cut(s) 41, 140, 448
BshFI GGCC 2 cut(s) 211, 271
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 3 cut(s) 44, 193, 559
BslI CCNNNNNNNGG 4 cut(s) 143, 337, 558, 562
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 2 cut(s) 211, 271
BsoBI CYCGRG 1 cut(s) 142
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 188, 213
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 3 cut(s) 32, 508, 562
BspANI GGCC 2 cut(s) 211, 271
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 3 cut(s) 56, 211, 239
BsrI ACTGG 2 cut(s) 79, 232
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 169, 260
BstDEI CTNAG 1 cut(s) 492
BstEII GGTNACC 1 cut(s) 458
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 411
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 153, 159, 168, 268
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 304
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 41, 140, 448
Bsu36I CCTNAGG 1 cut(s) 492
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 211, 271
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 169, 260
Cfr13I GGNCC 2 cut(s) 209, 210
CseI GACGC 1 cut(s) 50
CviAII CATG 1 cut(s) 301
DdeI CTNAG 1 cut(s) 492
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 188, 213
Eco32I GATATC 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 142
Eco91I GGTNACC 1 cut(s) 458
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 210
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 319
EcoT38I GRGCYC 2 cut(s) 188, 213
FaeI CATG 1 cut(s) 304
FaiI YATR 6 cut(s) 302, 434, 449, 539, 541, 543
FatI CATG 1 cut(s) 300
FauI CCCGC 2 cut(s) 501, 555
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 2 cut(s) 64, 86
Fnu4HI GCNGC 3 cut(s) 30, 154, 437
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 2 cut(s) 188, 213
Fsp4HI GCNGC 3 cut(s) 30, 154, 437
FspBI CTAG 3 cut(s) 111, 255, 440
GluI GCNGC 3 cut(s) 30, 154, 437
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 211, 271
HapII CCGG 3 cut(s) 44, 193, 559
HgaI GACGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 304
HincII GTYRAC 3 cut(s) 65, 87, 252
HindII GTYRAC 3 cut(s) 65, 87, 252
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 5 cut(s) 66, 104, 275, 392, 548
HpaII CCGG 3 cut(s) 44, 193, 559
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 3 cut(s) 65, 87, 252
Hpy188I TCNGA 2 cut(s) 94, 519
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 3 cut(s) 65, 87, 252
Hpy99I CGWCG 2 cut(s) 66, 88
HpyAV CCTTC 2 cut(s) 13, 331
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 383, 420, 436
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 159, 168, 268
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 3 cut(s) 60, 237, 297
Lsp1109I GCAGC 3 cut(s) 41, 140, 448
MaeI CTAG 3 cut(s) 111, 255, 440
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 458
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 425
MhlI GDGCHC 2 cut(s) 188, 213
MluCI AATT 3 cut(s) 98, 341, 473
MlyI GAGTC 2 cut(s) 60, 113
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 8 cut(s) 28, 100, 228, 251, 332, 473, 501, 566
MseI TTAA 3 cut(s) 215, 344, 362
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 3 cut(s) 44, 193, 559
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 4 cut(s) 153, 159, 168, 268
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 3 cut(s) 56, 211, 239
NmeAIII GCCGAG 1 cut(s) 188
NspI RCATGY 1 cut(s) 304
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 3 cut(s) 275, 392, 548
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 31, 155, 438
PleI GAGTC 2 cut(s) 60, 112
PpsI GAGTC 2 cut(s) 60, 112
Psp1406I AACGTT 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 56, 211, 239
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 209, 210
PsyI GACNNNGTC 1 cut(s) 229
SalI GTCGAC 2 cut(s) 63, 85
SaqAI TTAA 3 cut(s) 215, 344, 362
SatI GCNGC 3 cut(s) 30, 154, 437
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 209, 210
SchI GAGTC 2 cut(s) 60, 113
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 2 cut(s) 188, 213
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 98, 341, 473
SsiI CCGC 3 cut(s) 32, 508, 562
SspMI CTAG 3 cut(s) 111, 255, 440
StyD4I CCNGG 1 cut(s) 136
TaiI ACGT 1 cut(s) 223
TaqI TCGA 6 cut(s) 64, 86, 102, 175, 233, 534
TasI AATT 3 cut(s) 98, 341, 473
TfiI GAWTC 3 cut(s) 275, 392, 548
Tru1I TTAA 3 cut(s) 215, 344, 362
Tru9I TTAA 3 cut(s) 215, 344, 362
TscAI CASTG 1 cut(s) 164
TseI GCWGC 3 cut(s) 29, 153, 436
TspDTI ATGAA 1 cut(s) 422
TspRI CASTG 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 229
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmiI GTMKAC 2 cut(s) 64, 86
XspI CTAG 3 cut(s) 111, 255, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.