Rroxscaffold_4G00311280
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
33659036 .. 33663524
4489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311280.1

Sequence Viewer

Length: 411 bp
ATGACTGCTTGTTGGGAGCTGATGCTTTATGTGATTCTGGTGATTTGCATGATTGCAGAGAATATGCTCTCGTTTGATGATTGTATTAGCTGTGCTTTTATCGCCACTTCCTCTGTTCATCTGCACCTTTTAAGATGTAGGTCAGTACTCTCACCCCTCGCCAGACTCAAAGCCATCTACAGCGAAGCCCCGCTTCCCCAATTGGTTCATGCCTTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCTTGGAATTAAAGCAGTGTCCCACTTTAAGATTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGAATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAATCTCTCCCCCAGTGTTTGGACTTTGAATATCTCATCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

5.15

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 385
AciI CCGC 1 cut(s) 191
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 4 cut(s) 220, 244, 308, 395
AluBI AGCT 4 cut(s) 19, 90, 226, 355
AluI AGCT 4 cut(s) 19, 90, 226, 355
ApeKI GCWGC 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 52, 144
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 182
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 354
BmcAI AGTACT 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 12
BmuI ACTGGG 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 379
Bse8I GATNNNNATC 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 379
BseXI GCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 301
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 244
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 231, 408
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 2 cut(s) 272, 386
Cac8I GCNNGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 146
CviAII CATG 2 cut(s) 49, 209
CviJI RGCY 7 cut(s) 19, 90, 173, 188, 226, 230, 355
CviKI_1 RGCY 7 cut(s) 19, 90, 173, 188, 226, 230, 355
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 231, 408
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 52, 212
FaiI YATR 6 cut(s) 30, 50, 65, 210, 350, 365
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 48, 208
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 353
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 52, 212
HinfI GANTC 4 cut(s) 34, 165, 308, 368
HphI GGTGA 2 cut(s) 52, 144
Hpy188I TCNGA 1 cut(s) 234
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 48, 56, 124, 299, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 231, 408
Hsp92II CATG 2 cut(s) 52, 212
LmnI GCTCC 2 cut(s) 16, 223
LpnPI CCDG 5 cut(s) 23, 175, 212, 299, 392
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 12
MaeI CTAG 1 cut(s) 356
MboII GAAGA 1 cut(s) 341
MfeI CAATTG 1 cut(s) 200
MluCI AATT 2 cut(s) 200, 257
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 2 cut(s) 121, 167
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 3 cut(s) 131, 260, 278
MunI CAATTG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 52, 212
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 3 cut(s) 34, 308, 368
PflMI CCANNNNNTGG 1 cut(s) 385
PkrI GCNGC 1 cut(s) 354
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 131, 260, 278
SatI GCNGC 1 cut(s) 353
ScaI AGTACT 1 cut(s) 147
SchI GAGTC 1 cut(s) 159
SetI ASST 7 cut(s) 21, 92, 129, 143, 228, 254, 357
SfaNI GCATC 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 178
Sse9I AATT 2 cut(s) 200, 257
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 252
TasI AATT 2 cut(s) 200, 257
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 3 cut(s) 34, 308, 368
Tru1I TTAA 3 cut(s) 131, 260, 278
Tru9I TTAA 3 cut(s) 131, 260, 278
TscAI CASTG 2 cut(s) 272, 386
TseI GCWGC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 107, 197, 338
TspRI CASTG 2 cut(s) 272, 386
Van91I CCANNNNNTGG 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.