Rh5BG047000

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000693
Physical Location & Seq
Forward (+)
3744840 .. 3747744
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG047000.1

Sequence Viewer

Length: 564 bp
ATGGCTTCCACGATTGGCTCTCCAAGCAGTTCGTCCTCGTCGAGGCCGCCATCGTCATCATCACCAGTGGATGCTGCTATTGGCGGCATCATGGAACAACAAATGCGAGCTTTTGCACCAGCCTGTCCTGGGTTTCGTAAGGTAGTTTTGGCAACCAATATTGCTGAGACGTCAGTGACAATACCTGGAATCAAGTATGTTATAGACACTGGGGTTGTAAAAGCACACTTCTATAATCCAAACAAAGGGCTGGAACCTTTGATTGTTGTTCCAATTTCGAAAGCACAGGCTCTACAAAGGAGTTGGTGTGCAGGGAGAGAAAGACCAGGGAAATGCTTCTGTCTCTACCCAGAGAATGAATTTTGGAAACTTGAGGATTCAACAAAGCCAGATGTCAAGCGGTACGACGTCTCTAATGCCATTTTGCAACTTAAGGCTTTGGGTGTTCAATATATATGCTCTGTTTTGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGATGCACAATTCTAGCAATCTACATTGCTATGAGAACCTTGGTGGTAAAAGGAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0001817 GO:0001819 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003724 GO:0003725 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006356 GO:0006396 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008134 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032479 GO:0032481 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042623 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043408 GO:0043410 GO:0043484 GO:0043565 GO:0043603 GO:0043604 GO:0044087 GO:0044089 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045937 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051090 GO:0051091 GO:0051092 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0061702 GO:0065007 GO:0065009 GO:0070013 GO:0070035 GO:0071704 GO:0072559 GO:0080090 GO:0090304 GO:0097159 GO:0140098 GO:1900225 GO:1900227 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko03050 ko05169 map03040 map03050 map05169
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

187

Amino Acids

20.33

Weight (kDa)

9.04

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 173, 411
AciI CCGC 3 cut(s) 47, 84, 400
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 2 cut(s) 170, 408
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 42, 129, 245
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 381, 449
AjnI CCWGG 3 cut(s) 127, 184, 325
AluBI AGCT 2 cut(s) 110, 488
AluI AGCT 2 cut(s) 110, 488
Alw26I GTCTC 3 cut(s) 161, 347, 415
AlwI GGATC 1 cut(s) 485
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 74, 485
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 54
AsuII TTCGAA 1 cut(s) 278
BbvI GCAGC 2 cut(s) 61, 497
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 3 cut(s) 129, 186, 327
BcoDI GTCTC 3 cut(s) 161, 347, 415
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 431
BisI GCNGC 4 cut(s) 47, 75, 85, 486
BlsI GCNGC 4 cut(s) 48, 76, 86, 487
Bme1390I CCNGG 3 cut(s) 129, 186, 327
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 3 cut(s) 129, 186, 327
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 4 cut(s) 61, 96, 466, 495
BmuI ACTGGG 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 392
BsaHI GRCGYC 2 cut(s) 170, 408
BsaJI CCNNGG 3 cut(s) 128, 326, 541
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 129, 245
Bse1I ACTGG 2 cut(s) 65, 214
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 3 cut(s) 129, 186, 327
BseDI CCNNGG 3 cut(s) 128, 326, 541
BseGI GGATG 2 cut(s) 76, 481
BseLI CCNNNNNNNGG 3 cut(s) 42, 129, 245
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 65, 214
BseXI GCAGC 2 cut(s) 61, 497
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 42, 129, 245
BsmAI GTCTC 3 cut(s) 161, 347, 415
BsmBI CGTCTC 2 cut(s) 161, 415
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 3 cut(s) 47, 84, 400
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 2 cut(s) 65, 214
BssECI CCNNGG 3 cut(s) 128, 326, 541
BssMI GATC 1 cut(s) 490
BssNI GRCGYC 2 cut(s) 170, 408
BssT1I CCWWGG 1 cut(s) 541
Bst2UI CCWGG 3 cut(s) 129, 186, 327
BstACI GRCGYC 2 cut(s) 170, 408
BstAFI CTTAAG 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 76, 481
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 3 cut(s) 161, 347, 415
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 2 cut(s) 24, 485
BstNI CCWGG 3 cut(s) 129, 186, 327
BstSCI CCNGG 3 cut(s) 127, 184, 325
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 61, 497
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 76, 481
BtsIMutI CAGTG 3 cut(s) 72, 180, 207
Cac8I GCNNGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 91
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 541
EcoNI CCTNNNNNAGG 1 cut(s) 40
EcoRII CCWGG 3 cut(s) 127, 184, 325
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 2 cut(s) 161, 415
FaeI CATG 1 cut(s) 94
FaiI YATR 8 cut(s) 92, 198, 203, 234, 453, 455, 457, 534
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 47, 75, 85, 486
FokI GGATG 2 cut(s) 83, 488
Fsp4HI GCNGC 4 cut(s) 47, 75, 85, 486
FspBI CTAG 1 cut(s) 516
GluI GCNGC 4 cut(s) 47, 75, 85, 486
HaeIII GGCC 1 cut(s) 46
Hin1I GRCGYC 2 cut(s) 170, 408
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 189, 377
HphI GGTGA 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 43, 410
HpyCH4IV ACGT 2 cut(s) 170, 408
HpyCH4V TGCA 6 cut(s) 116, 311, 427, 479, 485, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 485
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 170, 408
Hsp92I GRCGYC 2 cut(s) 170, 408
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 490
Lsp1109I GCAGC 2 cut(s) 61, 497
LweI GCATC 4 cut(s) 61, 96, 466, 495
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 170, 408
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MluCI AATT 4 cut(s) 273, 359, 497, 511
MnlI CCTC 3 cut(s) 36, 46, 367
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 488
MspCI CTTAAG 1 cut(s) 431
MspR9I CCNGG 3 cut(s) 129, 186, 327
MvaI CCWGG 3 cut(s) 129, 186, 327
MwoI GCNNNNNNNGC 2 cut(s) 24, 485
NdeII GATC 1 cut(s) 490
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 175
NspV TTCGAA 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 189, 377
PkrI GCNGC 4 cut(s) 48, 76, 86, 487
Psp6I CCWGG 3 cut(s) 127, 184, 325
PspGI CCWGG 3 cut(s) 127, 184, 325
PspN4I GGNNCC 1 cut(s) 255
PstI CTGCAG 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 47, 75, 85, 486
Sau3AI GATC 1 cut(s) 490
ScrFI CCNGG 3 cut(s) 129, 186, 327
SetI ASST 8 cut(s) 112, 144, 173, 187, 259, 411, 490, 543
SfaNI GCATC 4 cut(s) 61, 96, 466, 495
SfcI CTRYAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 371, 431
SmoI CTYRAG 2 cut(s) 371, 431
Sse9I AATT 4 cut(s) 273, 359, 497, 511
SsiI CCGC 3 cut(s) 47, 84, 400
SspI AATATT 1 cut(s) 160
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 3 cut(s) 127, 184, 325
StyI CCWWGG 1 cut(s) 541
TaiI ACGT 2 cut(s) 173, 411
TaqI TCGA 2 cut(s) 41, 278
TasI AATT 4 cut(s) 273, 359, 497, 511
TauI GCSGC 2 cut(s) 49, 87
TfiI GAWTC 2 cut(s) 189, 377
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 3 cut(s) 72, 180, 214
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 74, 485
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 3 cut(s) 72, 180, 214
Vha464I CTTAAG 1 cut(s) 431
XagI CCTNNNNNAGG 1 cut(s) 40
XapI RAATTY 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 1 cut(s) 516
ZraI GACGTC 2 cut(s) 171, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.