Rh7BG144100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000693
Physical Location & Seq
Reverse (-)
10670895 .. 10671561
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG144100.1

Sequence Viewer

Length: 432 bp
ATGAGAGCAGAAAGCAAGAAAGCAACACTACAGTTAGTTGATATGGAGTGTAGTTACCTGACAGTTGATTTCTTTCGTAAACTTCCTCAAGATGTTGACAAGGGTGGCAACCCATCACATTCACTGTTTGATAGATACAATGACTCTTATCTCAGGCGAATTGGGTCAAACGTTCTGGCCTATGTCAATATGGTTTGTGCAAGTTTACGCAACTCTATTCCCAAGTCTGTTGTTTTTTGCCAAGTCAGAGAGGCAAAACGAAGCTTACTGGACCGTTTCTTCACCGATTTGGGTAAACTGGAGACGAAGCAGTTGTCATCTTTGCTGAATGAGGATCCGGCAGTTATGGAGAGGCGTACTGCCCTTGCGAAAAGGCTGGAGTTATACAGGAGTGCTCAGGCAGAGATGGATACAGTTGCTTGGTCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

143

Amino Acids

16.4

Weight (kDa)

9.22

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GED PF02212 47 - 138 4.5e-22 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 171
AclWI GGATC 2 cut(s) 329, 342
AfaI GTAC 1 cut(s) 358
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 329, 342
AoxI GGCC 1 cut(s) 177
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 397
BccI CCATC 2 cut(s) 121, 400
BciVI GTATCC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 336
BpmI CTGGAG 2 cut(s) 320, 398
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 273, 303
BseMII CTCAG 2 cut(s) 166, 410
BseNI ACTGG 2 cut(s) 273, 303
BshFI GGCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 1 cut(s) 334
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 165, 409
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 329, 342
BsrI ACTGG 2 cut(s) 273, 303
BssMI GATC 1 cut(s) 334
Bst4CI ACNGT 5 cut(s) 33, 64, 126, 275, 415
BstDEI CTNAG 3 cut(s) 152, 396, 426
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 357
CviJI RGCY 3 cut(s) 179, 264, 376
CviKI_1 RGCY 3 cut(s) 179, 264, 376
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 3 cut(s) 152, 396, 426
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 296
FaiI YATR 5 cut(s) 44, 183, 191, 347, 385
GsuI CTGGAG 2 cut(s) 320, 398
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 338
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 80, 97, 206, 296
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 4 cut(s) 80, 97, 206, 296
HpyCH4III ACNGT 5 cut(s) 33, 64, 126, 275, 415
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 152, 396, 426
HpySE526I ACGT 1 cut(s) 171
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 9 cut(s) 71, 139, 161, 254, 284, 351, 362, 373, 383
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 1 cut(s) 271
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 4 cut(s) 96, 244, 325, 345
MspI CCGG 1 cut(s) 338
NdeII GATC 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 336
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp1406I AACGTT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 397
SetI ASST 3 cut(s) 60, 174, 266
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 1 cut(s) 159
TaaI ACNGT 5 cut(s) 33, 64, 126, 275, 415
TaiI ACGT 1 cut(s) 174
TasI AATT 1 cut(s) 159
TscAI CASTG 1 cut(s) 129
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.