Rh1AG261900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000693
Physical Location & Seq
Reverse (-)
48447398 .. 48448125
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG261900.1

Sequence Viewer

Length: 213 bp
ATGTTTCTCATCGGAGACATGGATCTCGTTCTTTGGTGCAGAGACTTGTCCCAAAGCCTCAGATCTCTGCCTCAGTGTGGCCCCAACTCGAATTGGTCATCTACATCTTCCTCGTGGAAAGCTGCAAGAGCTAGTAATGGCGCCTGTGGCTTTTCCAGGTGGGTGGATAGCCATGGGCGGGATCTTCCTGTTCAAGAACAGATTGTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.71

Weight (kDa)

6.51

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AciI CCGC 1 cut(s) 178
AclWI GGATC 2 cut(s) 30, 189
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 77, 178
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 2 cut(s) 122, 131
AluI AGCT 2 cut(s) 122, 131
Alw26I GTCTC 2 cut(s) 9, 36
AlwI GGATC 2 cut(s) 30, 189
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 140
BauI CACGAG 1 cut(s) 112
BbvI GCAGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 9, 36
BfaI CTAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 144
BglII AGATCT 1 cut(s) 62
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 82, 142
BmrFI CCNGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 178
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 77, 178
BseMII CTCAG 2 cut(s) 73, 86
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 58
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 77, 178
BsmAI GTCTC 2 cut(s) 9, 36
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 22, 62, 181
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 1 cut(s) 178
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 72, 85
BspLI GGNNCC 2 cut(s) 82, 142
BspPI GGATC 2 cut(s) 30, 189
BspT107I GGYRCC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 22, 62, 181
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 59, 72
BstDSI CCRYGG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 25, 65, 184
BstMAI GTCTC 2 cut(s) 9, 36
BstMBI GATC 3 cut(s) 22, 62, 181
BstMWI GCNNNNNNNGC 2 cut(s) 128, 147
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 3 cut(s) 22, 62, 181
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 3 cut(s) 22, 62, 181
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 80
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 80
CviAII CATG 2 cut(s) 19, 173
CviJI RGCY 6 cut(s) 57, 81, 122, 131, 150, 171
CviKI_1 RGCY 6 cut(s) 57, 81, 122, 131, 150, 171
DdeI CTNAG 2 cut(s) 59, 72
DinI GGCGCC 1 cut(s) 142
DpnI GATC 3 cut(s) 24, 64, 183
DpnII GATC 3 cut(s) 22, 62, 181
Eco130I CCWWGG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 172
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 22, 176
FaiI YATR 2 cut(s) 20, 174
FaqI GGGAC 1 cut(s) 34
FatI CATG 2 cut(s) 18, 172
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 81
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 22, 176
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 14, 62
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 39, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 147
HpyF3I CTNAG 2 cut(s) 59, 72
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 22, 176
HspAI GCGC 1 cut(s) 141
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 3 cut(s) 22, 62, 181
LpnPI CCDG 4 cut(s) 142, 157, 169, 201
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 132
MalI GATC 3 cut(s) 24, 64, 183
MboI GATC 3 cut(s) 22, 62, 181
MboII GAAGA 2 cut(s) 99, 176
MflI RGATCY 3 cut(s) 22, 62, 181
MluCI AATT 1 cut(s) 91
Mly113I GGCGCC 1 cut(s) 141
MnlI CCTC 3 cut(s) 68, 81, 121
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 128, 147
NarI GGCGCC 1 cut(s) 141
NcoI CCATGG 1 cut(s) 172
NdeII GATC 3 cut(s) 22, 62, 181
NlaIII CATG 2 cut(s) 22, 176
NlaIV GGNNCC 2 cut(s) 82, 142
PkrI GCNGC 1 cut(s) 124
PluTI GGCGCC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 82, 142
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 3 cut(s) 22, 62, 181
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 3 cut(s) 22, 62, 181
Sau96I GGNCC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 157
SetI ASST 3 cut(s) 124, 133, 161
SfoI GGCGCC 1 cut(s) 142
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 178
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 172
TaqI TCGA 1 cut(s) 89
TasI AATT 1 cut(s) 91
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 122
TspRI CASTG 1 cut(s) 80
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.