RchiOBHm_Chr7g0230311
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
53753170 .. 53761599
8430 bp
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UTR
Exon/CDS
Intron
PRQ20636

Sequence Viewer

Length: 183 bp
ATGAAAGAAGAGAGCAATGAAGCAACTATGCAGCCAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTGAGGATATTGAAAAGGGGGGAAATCTGACACACTCACTTTTCGACAGATATAACGATTCCTACCTCCGGTGGGTTGGGCATTCCTCCTCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.98

Weight (kDa)

4.74

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 153, 157
AgsI TTSAA 2 cut(s) 68, 98
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 87
BbvI GCAGC 1 cut(s) 43
BfaI CTAG 1 cut(s) 181
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 157
Bse1I ACTGG 1 cut(s) 35
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 22
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 153, 157
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 153, 157
BsmI GAATGC 1 cut(s) 166
BspACI CCGC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 87
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 80
CviJI RGCY 2 cut(s) 34, 82
CviKI_1 RGCY 2 cut(s) 34, 82
DdeI CTNAG 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco81I CCTNAGG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 53
FaiI YATR 3 cut(s) 29, 44, 138
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 181
GluI GCNGC 1 cut(s) 32
HapII CCGG 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 87
LpnPI CCDG 3 cut(s) 48, 99, 167
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 1 cut(s) 20
MluCI AATT 1 cut(s) 68
MnlI CCTC 4 cut(s) 68, 82, 161, 181
MspI CCGG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 166
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 33
PspEI GGTNACC 1 cut(s) 53
SatI GCNGC 1 cut(s) 32
SetI ASST 3 cut(s) 60, 84, 153
SgeI CNNG 4 cut(s) 47, 91, 98, 166
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 143
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 17, 33
XapI RAATTY 1 cut(s) 68
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.