RLG00000029245
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000693
Physical Location & Seq
Forward (+)
35339066 .. 35342096
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029245

Sequence Viewer

Length: 663 bp
ATGTGGGGTCCCCATTGCTCTGAGAGCAAGCCCAATCACTCCCAGGTTGACGACCCTGAGTTCATATACAACACTTGGCTCTGGTCCAAGTTTGACGAGCTCATCGAGTCCCTCATCCAGCTCATTCTTTTGCCGAAATCCGATGAAACTCTCAAGGAGGTGGTGTTGGATACACTGATGGAGTTTTTGAAGTTGGGAAATGGAAGAAGGTTTCACTCTGCTATATTCCTTAGGTTTCTTCGTAACATTATTGTTTTGGGTATGGGGGTTTTTGGGTGGCCAACCGCCGTTGGGGCATCATCCTCTGGGTGGACCGGGGCTGTCATCTGTGGGAAATCAGGGATCGGGGAGTGGTGCTTAAAATTACGAATAAAGGTTCATGCAGTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGCGACCTCGGAATTAAAGCAATATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTAGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTAGATATGGAGTGTGGTTATCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAAGGGGGAAATCCGACACACTCACTTTTCGACAGATATAATGATTCCTACCTCCGACGGGTTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

221

Amino Acids

25.14

Weight (kDa)

6.97

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 285, 568
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 1 cut(s) 560
AfiI CCNNNNNNNGG 3 cut(s) 291, 309, 649
AgsI TTSAA 6 cut(s) 190, 391, 415, 479, 560, 590
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 5 cut(s) 100, 121, 397, 526, 574
AluI AGCT 5 cut(s) 100, 121, 397, 526, 574
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 1 cut(s) 350
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 1 cut(s) 560
Asp700I GAANNNNTTC 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 8, 84, 312
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 3 cut(s) 8, 84, 312
AxyI CCTNAGG 2 cut(s) 230, 579
BalI TGGCCA 1 cut(s) 280
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 535
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 163
BcnI CCSGG 1 cut(s) 316
BfaI CTAG 2 cut(s) 485, 527
BfuI GTATCC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 2 cut(s) 44, 316
Bme18I GGWCC 3 cut(s) 8, 84, 312
BmgT120I GGNCC 3 cut(s) 8, 84, 312
BmiI GGNNCC 2 cut(s) 9, 10
BmrFI CCNGG 2 cut(s) 44, 316
BmsI GCATC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 42, 315, 423
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 309, 649
Bse21I CCTNAGG 2 cut(s) 230, 579
Bse3DI GCAATG 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 478
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 42, 315, 423
BseGI GGATG 3 cut(s) 114, 299, 498
BseJI GATNNNNATC 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 291, 309, 649
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 4 cut(s) 12, 48, 416, 593
BseXI GCAGC 1 cut(s) 535
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 291, 309, 649
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 2 cut(s) 285, 568
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 4 cut(s) 13, 49, 415, 592
BspLI GGNNCC 2 cut(s) 9, 10
BspPI GGATC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 42, 315, 423
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 29, 399, 572
BstDEI CTNAG 5 cut(s) 21, 57, 230, 402, 579
BstF5I GGATG 3 cut(s) 114, 299, 498
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 24, 293
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 42, 314
BstV1I GCAGC 1 cut(s) 535
Bsu36I CCTNAGG 2 cut(s) 230, 579
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 114, 299, 498
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 29, 399, 572
Cfr13I GGNCC 3 cut(s) 8, 84, 312
CviAII CATG 1 cut(s) 380
DdeI CTNAG 5 cut(s) 21, 57, 230, 402, 579
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 8, 84, 312
Eco53kI GAGCTC 1 cut(s) 100
Eco81I CCTNAGG 2 cut(s) 230, 579
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 1 cut(s) 383
FaiI YATR 8 cut(s) 65, 67, 224, 263, 381, 521, 536, 630
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 3 cut(s) 101, 286, 505
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 2 cut(s) 485, 527
GluI GCNGC 1 cut(s) 524
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 315
Hin1II CATG 1 cut(s) 383
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 3 cut(s) 107, 479, 635
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 49, 312
Hpy188I TCNGA 6 cut(s) 22, 142, 405, 427, 606, 647
Hpy188III TCNNGA 1 cut(s) 581
Hpy8I GTNNAC 2 cut(s) 49, 312
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 2 cut(s) 201, 385
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4V TGCA 3 cut(s) 383, 470, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 293
HpyF3I CTNAG 5 cut(s) 21, 57, 230, 402, 579
Hsp92II CATG 1 cut(s) 383
KflI GGGWCCC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 1 cut(s) 305
MaeI CTAG 2 cut(s) 485, 527
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 3 cut(s) 216, 230, 512
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 3 cut(s) 362, 428, 560
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 147, 629
MnlI CCTC 6 cut(s) 122, 151, 313, 433, 588, 653
Mox20I TGGCCA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 410
MscI TGGCCA 1 cut(s) 280
MseI TTAA 3 cut(s) 359, 431, 449
Msp20I TGGCCA 1 cut(s) 280
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 44, 316
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 24, 293
NciI CCSGG 1 cut(s) 316
NdeII GATC 1 cut(s) 342
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 2 cut(s) 9, 10
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 479, 635
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 9, 10
PspPI GGNCC 3 cut(s) 8, 84, 312
PspPPI RGGWCCY 1 cut(s) 8
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 359, 431, 449
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 3 cut(s) 8, 84, 312
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 44, 316
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 305
SinI GGWCC 3 cut(s) 8, 84, 312
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 362, 428, 560
SsiI CCGC 2 cut(s) 285, 568
SspMI CTAG 2 cut(s) 485, 527
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 42, 314
TaaI ACNGT 1 cut(s) 556
TaqI TCGA 2 cut(s) 105, 621
TasI AATT 3 cut(s) 362, 428, 560
TfiI GAWTC 2 cut(s) 479, 635
Tru1I TTAA 3 cut(s) 359, 431, 449
Tru9I TTAA 3 cut(s) 359, 431, 449
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 523
TspDTI ATGAA 4 cut(s) 52, 159, 368, 509
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 3 cut(s) 8, 84, 312
XapI RAATTY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 2 cut(s) 485, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.