Rorug04G0136900
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000693
Physical Location & Seq
Reverse (-)
22196586 .. 22224738
28153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0136900.1

Sequence Viewer

Length: 585 bp
ATGGCGACCTTCGTCACAGTGCTCGTCGACTCGGTGGACCCGCTCGTCGGTGTTCGTCAAGATGCCGCTAGGGTTTTTGAAGATGACGACGATGGAGAGCTGAACGGATCTCGCCGGACATTTGAAATCGAAGGAGAAGAGCTACTCGCCGGTTCGAACATTCCAGAGCTTTGCGGCGTAGTCGCCGCTACCAGTCATGAGGCGCGAGGAGTCTCTGGAGACATCGCAATACCAAACGGCGCCGCCGCAGCTGAGGGCCTTCACTGTGGAGCTCGACGTCGGTGCGGACGGCTCTGTTATTTAGAAGTAGAAAAGGCGAAGCTAGATGATGGACTATCAGATTTAAGTTATTTGTTGGGAGAGCTAAAGGATATGGCCTTTGACAGGGGTCTGAAATCGATAGAATTCTTCCCCTTTGCATTTGTAGTGGTAGATTTCAAAACTCATCTTTTGTGGTCGCCGGAGTTCGCCGAAGTTGGTCGGAGGTCGGCCGGAGATCCGTTGGAAGTTGGCCGGAGGTCGGCCGGAAACCTGTCGGAGTTGACCGGAGACCTCGCCGGAGAGGAGAGAGAGAATGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

194

Amino Acids

20.91

Weight (kDa)

4.49

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AatII GACGTC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 205
AciI CCGC 7 cut(s) 41, 66, 174, 186, 243, 246, 285
AclWI GGATC 2 cut(s) 115, 491
AcoI YGGCCR 3 cut(s) 489, 511, 522
AcsI RAATTY 1 cut(s) 404
AcyI GRCGYC 2 cut(s) 240, 277
AfiI CCNNNNNNNGG 3 cut(s) 47, 384, 520
AgsI TTSAA 3 cut(s) 80, 125, 439
AluBI AGCT 7 cut(s) 100, 142, 169, 251, 272, 322, 364
AluI AGCT 7 cut(s) 100, 142, 169, 251, 272, 322, 364
Alw21I GWGCWC 2 cut(s) 24, 274
Alw26I GTCTC 3 cut(s) 213, 217, 543
AlwI GGATC 2 cut(s) 115, 491
AoxI GGCC 5 cut(s) 256, 375, 489, 511, 522
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 404
AspLEI GCGC 2 cut(s) 205, 242
AspS9I GGNCC 2 cut(s) 37, 256
AsuII TTCGAA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 24, 274
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 260
BccI CCATC 2 cut(s) 86, 323
BceAI ACGGC 2 cut(s) 253, 305
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BcoDI GTCTC 3 cut(s) 213, 217, 543
BfaI CTAG 2 cut(s) 69, 323
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 6 cut(s) 66, 175, 186, 243, 246, 249
BlsI GCNGC 6 cut(s) 67, 176, 187, 244, 247, 250
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 256
BmiI GGNNCC 2 cut(s) 39, 241
BmsI GCATC 1 cut(s) 52
BoxI GACNNNNGTC 2 cut(s) 11, 387
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 398
BsaHI GRCGYC 2 cut(s) 240, 277
BsaI GGTCTC 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 384, 520
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 47, 384, 520
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 2 cut(s) 222, 578
BseX3I CGGCCG 2 cut(s) 489, 522
BseXI GCAGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 2 cut(s) 492, 525
BshFI GGCC 5 cut(s) 258, 377, 491, 513, 524
BshNI GGYRCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 398
BsiEI CGRYCG 2 cut(s) 492, 525
BsiHKAI GWGCWC 2 cut(s) 24, 274
BsiSI CCGG 8 cut(s) 115, 150, 461, 492, 514, 525, 546, 558
BslI CCNNNNNNNGG 3 cut(s) 47, 384, 520
BsmAI GTCTC 3 cut(s) 213, 217, 543
BsnI GGCC 5 cut(s) 258, 377, 491, 513, 524
Bso31I GGTCTC 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 24, 274
Bsp143I GATC 2 cut(s) 107, 496
BspACI CCGC 7 cut(s) 41, 66, 174, 186, 243, 246, 285
BspANI GGCC 5 cut(s) 258, 377, 491, 513, 524
BspCNI CTCAG 1 cut(s) 244
BspDI ATCGAT 1 cut(s) 398
BspFNI CGCG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 39, 241
BspPI GGATC 2 cut(s) 115, 491
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 2 cut(s) 107, 496
BssNI GRCGYC 2 cut(s) 240, 277
Bst4CI ACNGT 2 cut(s) 19, 266
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 2 cut(s) 240, 277
BstBI TTCGAA 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 252
BstENI CCTNNNNNAGG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 205, 242
BstKTI GATC 2 cut(s) 110, 499
BstMAI GTCTC 3 cut(s) 213, 217, 543
BstMBI GATC 2 cut(s) 107, 496
BstMCI CGRYCG 2 cut(s) 492, 525
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstPAI GACNNNNGTC 2 cut(s) 11, 387
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 107, 496
BstYI RGATCY 2 cut(s) 107, 496
BstZI CGGCCG 2 cut(s) 489, 522
Bsu15I ATCGAT 1 cut(s) 398
BsuRI GGCC 5 cut(s) 258, 377, 491, 513, 524
BsuTUI ATCGAT 1 cut(s) 398
BtgZI GCGATG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 24, 262
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 205, 242
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 37, 256
ClaI ATCGAT 1 cut(s) 398
CviAII CATG 1 cut(s) 197
DdeI CTNAG 1 cut(s) 252
DinI GGCGCC 1 cut(s) 241
DpnI GATC 2 cut(s) 109, 498
DpnII GATC 2 cut(s) 107, 496
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 3 cut(s) 489, 511, 522
EagI CGGCCG 2 cut(s) 489, 522
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 272
EclXI CGGCCG 2 cut(s) 489, 522
Eco24I GRGCYC 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 37
Eco52I CGGCCG 2 cut(s) 489, 522
Eco53kI GAGCTC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 274
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
FaeI CATG 1 cut(s) 200
FaiI YATR 2 cut(s) 198, 374
FatI CATG 1 cut(s) 196
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 6 cut(s) 66, 175, 186, 243, 246, 249
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 6 cut(s) 66, 175, 186, 243, 246, 249
FspBI CTAG 2 cut(s) 69, 323
GlaI GCGC 2 cut(s) 204, 241
GluI GCNGC 6 cut(s) 66, 175, 186, 243, 246, 249
GsuI CTGGAG 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 5 cut(s) 258, 377, 491, 513, 524
HapII CCGG 8 cut(s) 115, 150, 461, 492, 514, 525, 546, 558
HhaI GCGC 2 cut(s) 205, 242
Hin1I GRCGYC 2 cut(s) 240, 277
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 2 cut(s) 203, 240
HinP1I GCGC 2 cut(s) 203, 240
HincII GTYRAC 2 cut(s) 28, 543
HindII GTYRAC 2 cut(s) 28, 543
HinfI GANTC 2 cut(s) 29, 210
HpaII CCGG 8 cut(s) 115, 150, 461, 492, 514, 525, 546, 558
Hpy166II GTNNAC 3 cut(s) 28, 37, 543
Hpy188I TCNGA 4 cut(s) 340, 393, 483, 538
Hpy188III TCNNGA 4 cut(s) 59, 164, 197, 216
Hpy8I GTNNAC 3 cut(s) 28, 37, 543
Hpy99I CGWCG 5 cut(s) 29, 50, 92, 279, 282
HpyAV CCTTC 3 cut(s) 19, 125, 269
HpyCH4III ACNGT 2 cut(s) 19, 266
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 277
Hsp92I GRCGYC 2 cut(s) 240, 277
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 2 cut(s) 203, 240
KasI GGCGCC 1 cut(s) 239
Kzo9I GATC 2 cut(s) 107, 496
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 69, 323
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 109, 498
MbiI CCGCTC 1 cut(s) 43
MboI GATC 2 cut(s) 107, 496
MboII GAAGA 3 cut(s) 92, 149, 400
MflI RGATCY 2 cut(s) 107, 496
MhlI GDGCHC 2 cut(s) 24, 274
MluCI AATT 1 cut(s) 404
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 2 cut(s) 23, 219
MmeI TCCRAC 3 cut(s) 461, 483, 516
MnlI CCTC 7 cut(s) 193, 200, 247, 477, 510, 556, 563
MseI TTAA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 8 cut(s) 115, 150, 461, 492, 514, 525, 546, 558
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 248
NarI GGCGCC 1 cut(s) 240
NdeII GATC 2 cut(s) 107, 496
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 2 cut(s) 39, 241
NmuCI GTSAC 1 cut(s) 13
NspV TTCGAA 1 cut(s) 155
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 132
PkrI GCNGC 6 cut(s) 67, 176, 187, 244, 247, 250
PleI GAGTC 2 cut(s) 23, 218
PluTI GGCGCC 1 cut(s) 243
PpsI GAGTC 2 cut(s) 23, 218
PshAI GACNNNNGTC 2 cut(s) 11, 387
Psp124BI GAGCTC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 39, 241
PspPI GGNCC 2 cut(s) 37, 256
PsuI RGATCY 2 cut(s) 107, 496
PvuII CAGCTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 274
SalI GTCGAC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 6 cut(s) 66, 175, 186, 243, 246, 249
Sau3AI GATC 2 cut(s) 107, 496
Sau96I GGNCC 2 cut(s) 37, 256
SchI GAGTC 2 cut(s) 23, 219
SduI GDGCHC 2 cut(s) 24, 274
SfaNI GCATC 1 cut(s) 52
SfoI GGCGCC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 1 cut(s) 37
Sse9I AATT 1 cut(s) 404
SsiI CCGC 7 cut(s) 41, 66, 174, 186, 243, 246, 285
SspDI GGCGCC 1 cut(s) 239
SspMI CTAG 2 cut(s) 69, 323
SstI GAGCTC 1 cut(s) 274
TaaI ACNGT 2 cut(s) 19, 266
TaiI ACGT 1 cut(s) 280
TaqI TCGA 5 cut(s) 27, 129, 155, 274, 398
TasI AATT 1 cut(s) 404
TauI GCSGC 5 cut(s) 68, 177, 188, 245, 248
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 24, 269
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 13
TspGWI ACGGA 2 cut(s) 120, 489
TspRI CASTG 2 cut(s) 24, 269
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 382
XapI RAATTY 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 2 cut(s) 69, 323
ZraI GACGTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.