Rh3AG192100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000693
Physical Location & Seq
Forward (+)
18533135 .. 18534513
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG192100.1

Sequence Viewer

Length: 345 bp
ATGACTACAATATCCAACGGCTATCCAGCCATGTGGTGCCGTATGGCAGTCTCGACCGCGTCGACTGTGGCGCCGACCTCTGTGGCCTTCTTCCTTATTGAGGCCGCCTTCTTCCTAGCAGGGGCCACTCAGATTCAAATAATAAAGGTTCATGCCGTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTCGGAATGCAAGATTTGAATCACTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

7.76

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 49 - 106 1.9e-06 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 36, 70
AccI GTMKAC 1 cut(s) 62
AccII CGCG 1 cut(s) 59
AciI CCGC 3 cut(s) 57, 105, 331
AcsI RAATTY 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 100, 121
AgsI TTSAA 5 cut(s) 137, 163, 187, 242, 323
AluBI AGCT 3 cut(s) 169, 289, 337
AluI AGCT 3 cut(s) 169, 289, 337
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 3 cut(s) 84, 102, 123
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 307
BanI GGYRCC 2 cut(s) 36, 70
BbvI GCAGC 1 cut(s) 298
BceAI ACGGC 3 cut(s) 24, 34, 140
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 116, 290
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 2 cut(s) 105, 287
BlsI GCNGC 2 cut(s) 106, 288
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 3 cut(s) 38, 72, 124
BsaBI GATNNNNATC 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 121
Bse1I ACTGG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 241
BseGI GGATG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 100, 121
BseMII CTCAG 2 cut(s) 143, 188
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 86, 104, 125
BshNI GGYRCC 2 cut(s) 36, 70
BsiEI CGRYCG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 100, 121
BsmAI GTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 3 cut(s) 86, 104, 125
BspACI CCGC 3 cut(s) 57, 105, 331
BspANI GGCC 3 cut(s) 86, 104, 125
BspCNI CTCAG 2 cut(s) 142, 187
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 38, 72, 124
BspT107I GGYRCC 2 cut(s) 36, 70
BsrI ACTGG 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 67, 319
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 171, 335
BstDEI CTNAG 3 cut(s) 129, 174, 342
BstEII GGTNACC 1 cut(s) 308
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 261
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 308
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 33
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 86, 104, 125
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 171, 335
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 1 cut(s) 48
CviAII CATG 2 cut(s) 31, 152
CviJI RGCY 9 cut(s) 21, 29, 86, 104, 125, 169, 173, 289, 337
CviKI_1 RGCY 9 cut(s) 21, 29, 86, 104, 125, 169, 173, 289, 337
DdeI CTNAG 3 cut(s) 129, 174, 342
DinI GGCGCC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 308
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
FaeI CATG 2 cut(s) 34, 155
FaiI YATR 5 cut(s) 32, 44, 153, 284, 299
FatI CATG 2 cut(s) 30, 151
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 105, 287
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 105, 287
FspBI CTAG 2 cut(s) 116, 290
GlaI GCGC 1 cut(s) 72
GluI GCNGC 2 cut(s) 105, 287
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 3 cut(s) 86, 104, 125
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 2 cut(s) 34, 155
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 2 cut(s) 133, 242
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 132, 177, 228
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 97, 118, 157
HpyCH4III ACNGT 2 cut(s) 67, 319
HpyCH4V TGCA 2 cut(s) 233, 286
HpyF3I CTNAG 3 cut(s) 129, 174, 342
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 2 cut(s) 34, 155
HspAI GCGC 1 cut(s) 71
KasI GGCGCC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 4 cut(s) 39, 105, 155, 233
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 2 cut(s) 116, 290
MaeIII GTNAC 1 cut(s) 308
MboII GAAGA 3 cut(s) 82, 103, 275
MluCI AATT 2 cut(s) 191, 323
Mly113I GGCGCC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 3 cut(s) 88, 94, 323
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 2 cut(s) 194, 212
Mva1269I GAATGC 1 cut(s) 235
MvnI CGCG 1 cut(s) 59
NarI GGCGCC 1 cut(s) 71
NlaIII CATG 2 cut(s) 34, 155
NlaIV GGNNCC 3 cut(s) 38, 72, 124
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 133, 242
PflFI GACNNNGTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 106, 288
PluTI GGCGCC 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 38, 72, 124
PspPI GGNCC 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 58
SalI GTCGAC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 194, 212
SatI GCNGC 2 cut(s) 105, 287
Sau96I GGNCC 1 cut(s) 123
SetI ASST 6 cut(s) 80, 150, 171, 291, 315, 339
SfoI GGCGCC 1 cut(s) 72
Sse9I AATT 2 cut(s) 191, 323
SsiI CCGC 3 cut(s) 57, 105, 331
SspDI GGCGCC 1 cut(s) 70
SspMI CTAG 2 cut(s) 116, 290
TaaI ACNGT 2 cut(s) 67, 319
TaqI TCGA 2 cut(s) 53, 62
TasI AATT 2 cut(s) 191, 323
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 133, 242
Tru1I TTAA 2 cut(s) 194, 212
Tru9I TTAA 2 cut(s) 194, 212
TscAI CASTG 1 cut(s) 252
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 140, 204, 272
TspRI CASTG 1 cut(s) 252
Tth111I GACNNNGTC 1 cut(s) 58
XagI CCTNNNNNAGG 1 cut(s) 98
XapI RAATTY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 116, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.