Rroxscaffold_4G00299880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000693
Physical Location & Seq
Forward (+)
19800743 .. 19801072
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299880.1

Sequence Viewer

Length: 330 bp
ATGGTGAAGACAACGACGAAGGAGGAATATATACCGGTTGATGGAAGGTCCTCAGCTTTGGTGGAGTTTCTCCGGCAAGATATTGTCAATGGAAATTTGGATAGAGTGAAAGAATGTGTGGCCATAGCTGAGAATATTGGCGGAGAAGACAGCAGAGTTTCACTCATCAACGCTATTGGCCGGGCTCTAGAGTACTACGAGAAGGCCAAGGAATGCTTCCATTACTTGATGGATAATGGTGTTTCTATTGTAAACTCGAGCAAAGAAGGTGACGAGTTAGCCATGGACTATGCTTTGGATTTCGAGTGGTATATTTTCCAAACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.41

Weight (kDa)

4.58

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 2 cut(s) 120, 178
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 41
AgeI ACCGGT 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 56, 128
AluI AGCT 2 cut(s) 56, 128
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 3 cut(s) 120, 178, 204
ApoI RAATTY 1 cut(s) 94
AsiGI ACCGGT 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 16, 281
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 1 cut(s) 48
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 14, 153
BbvCI CCTCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 35, 223
BcnI CCSGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 188
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 182
BpiI GAAGAC 2 cut(s) 14, 153
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 207, 282
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 207, 282
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 66, 120
BshFI GGCC 3 cut(s) 122, 180, 206
BshTI ACCGGT 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 3 cut(s) 35, 73, 181
BslI CCNNNNNNNGG 1 cut(s) 41
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 3 cut(s) 122, 180, 206
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 1 cut(s) 141
BspANI GGCC 3 cut(s) 122, 180, 206
BspCNI CTCAG 2 cut(s) 65, 121
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 207, 282
BssT1I CCWWGG 2 cut(s) 207, 282
BstDEI CTNAG 2 cut(s) 52, 129
BstDSI CCRYGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 14, 153
BsuRI GGCC 3 cut(s) 122, 180, 206
BtgI CCRYGG 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 193
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 1 cut(s) 283
CviJI RGCY 7 cut(s) 56, 122, 128, 180, 185, 206, 281
CviKI_1 RGCY 7 cut(s) 56, 122, 128, 180, 185, 206, 281
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 52, 129
EaeI YGGCCR 2 cut(s) 120, 178
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 207, 282
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 207, 282
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 207, 282
FaeI CATG 1 cut(s) 286
FaiI YATR 6 cut(s) 30, 32, 125, 284, 291, 312
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 187
FspBI CTAG 1 cut(s) 188
HaeIII GGCC 3 cut(s) 122, 180, 206
HapII CCGG 3 cut(s) 35, 73, 181
Hin1II CATG 1 cut(s) 286
HpaII CCGG 3 cut(s) 35, 73, 181
HphI GGTGA 2 cut(s) 16, 281
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 4 cut(s) 13, 39, 196, 260
HpyF3I CTNAG 2 cut(s) 52, 129
Hsp92II CATG 1 cut(s) 286
LpnPI CCDG 3 cut(s) 48, 86, 194
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 2 cut(s) 19, 158
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 122
MnlI CCTC 2 cut(s) 16, 61
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 3 cut(s) 35, 73, 181
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 282
NlaIII CATG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 256
PctI GAATGC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
PspPI GGNCC 1 cut(s) 48
PspPPI RGGWCCY 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 256
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 48
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 187
SetI ASST 4 cut(s) 50, 58, 130, 271
Sfr274I CTCGAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 2 cut(s) 207, 282
TaqI TCGA 2 cut(s) 257, 303
TasI AATT 1 cut(s) 94
TatI WGTACW 1 cut(s) 192
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 256
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.