Rh6BG052300
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
8467301 .. 8470254
2954 bp
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UTR
Exon/CDS
Intron
Rh6BG052300.1

Sequence Viewer

Length: 273 bp
ATGCCATGGTTGTTCAAATGCAGGTCTTTAGCTACTCAGATCTACTTAGGTCTTTGGAAGCAAATCAAAGCCGCTCTAGCAGGAACTCATAGCTCTCTCAGCTCCAGTGTTTCTATCATCCCAAGTCCCACTATTCAGGTTCATGCCATATTGAAGCAGTATCCCACTTTAAGAGTGGTAGTTGGGAATGCAGCCTTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGAAAGCACAAGTGAGGTCTGATCCTACAGAAAAGATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.01

Weight (kDa)

9.84

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 245
AgsI TTSAA 3 cut(s) 16, 154, 200
AluBI AGCT 3 cut(s) 32, 93, 102
AluI AGCT 3 cut(s) 32, 93, 102
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 259
BciVI GTATCC 1 cut(s) 171
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 12
BfuI GTATCC 1 cut(s) 171
BglII AGATCT 1 cut(s) 39
BisI GCNGC 2 cut(s) 72, 192
BlsI GCNGC 2 cut(s) 73, 193
BpmI CTGGAG 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 2 cut(s) 117, 219
BseMII CTCAG 2 cut(s) 50, 112
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 203
BslFI GGGAC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 39, 250
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 49, 111
BspMI ACCTGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 39, 250
BssT1I CCWWGG 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 36, 46, 98
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 2 cut(s) 117, 219
BstKTI GATC 2 cut(s) 42, 253
BstMBI GATC 2 cut(s) 39, 250
BstMWI GCNNNNNNNGC 2 cut(s) 77, 99
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuI GTATCC 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 117, 219
BtsIMutI CAGTG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 12
CviAII CATG 2 cut(s) 6, 143
CviJI RGCY 5 cut(s) 32, 71, 93, 102, 194
CviKI_1 RGCY 5 cut(s) 32, 71, 93, 102, 194
DdeI CTNAG 3 cut(s) 36, 46, 98
DpnI GATC 2 cut(s) 41, 252
DpnII GATC 2 cut(s) 39, 250
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 9, 146
FaiI YATR 4 cut(s) 7, 90, 144, 149
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 5, 142
Fnu4HI GCNGC 2 cut(s) 72, 192
FokI GGATG 2 cut(s) 104, 226
Fsp4HI GCNGC 2 cut(s) 72, 192
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 72, 192
GsuI CTGGAG 1 cut(s) 88
Hin1II CATG 2 cut(s) 9, 146
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 39, 250
HpyCH4V TGCA 2 cut(s) 21, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 99
HpyF3I CTNAG 3 cut(s) 36, 46, 98
Hsp92II CATG 2 cut(s) 9, 146
Kzo9I GATC 2 cut(s) 39, 250
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 7, 66, 118, 122, 191
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 1 cut(s) 77
MalI GATC 2 cut(s) 41, 252
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 39, 250
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 39
MnlI CCTC 1 cut(s) 237
MseI TTAA 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 77, 99
NcoI CCATGG 1 cut(s) 5
NdeII GATC 2 cut(s) 39, 250
NlaIII CATG 2 cut(s) 9, 146
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 73, 193
PsuI RGATCY 1 cut(s) 39
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 72, 192
Sau3AI GATC 2 cut(s) 39, 250
SetI ASST 7 cut(s) 26, 34, 52, 95, 104, 141, 248
SfcI CTRYAG 1 cut(s) 255
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 5
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 131, 230
TspRI CASTG 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.