RLG00000032850
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
19948314 .. 19950699
2386 bp
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UTR
Exon/CDS
Intron
RLM00000032850

Sequence Viewer

Length: 531 bp
ATGCCTTTTCTTCCTCTTAATCTTTCCGATTCCCTAAACTCCAAAGCTTTCCTTTCGCTCCTCCTTCTCCCCAAACCCAAATCTTCTGTTCCTCGCTACAAGCCTTACCCACTCTCCCTCAGCTCTCCACATGAACGCTCCCACATCAGAACGGAAGCCCTCCTTTTAGGTCTCATTAATGATGTTGTATTGCCAGAGCTACTGGTCAGTACTCTCTCACCCCTTGCCAGACTCAAAGCCATCTACAATGAAGCCCCACTTCCCCAATTGGTTCATGCCGTATTGAAGAAGCTAGCTCAAAAGTCTTTCAATGCGACCTCGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTAGGAATGCAAGATTTGAAACGCTGGATAGGATGAAAGAAGAGAGTAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTTGTTACCTCACCGTTGAATTTTTCCGCAAACTTCCTCAGGGTATTGAAAAGGGGGGAAATCCGACACACTCACTTTTCGACAGATCGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

9.25

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 89 - 151 7.7e-07 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 463
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 5 cut(s) 286, 310, 374, 455, 485
AluBI AGCT 6 cut(s) 47, 123, 199, 292, 296, 421
AluI AGCT 6 cut(s) 47, 123, 199, 292, 296, 421
Alw26I GTCTC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 418
ApoI RAATTY 1 cut(s) 455
AseI ATTAAT 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 210, 439
AsuNHI GCTAGC 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 474
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 263
BciVI GTATCC 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 293, 422
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
BmcAI AGTACT 1 cut(s) 211
BmtI GCTAGC 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse1I ACTGG 1 cut(s) 207
Bse21I CCTNAGG 1 cut(s) 474
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 133, 488
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 430
BshVI ATCGAT 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 521
BspACI CCGC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 132, 487
BspDI ATCGAT 1 cut(s) 524
BspOI GCTAGC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 521
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 119, 474
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 1 cut(s) 524
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 474
BsuI GTATCC 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 524
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 524
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 131, 275
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 119, 474
DpnI GATC 1 cut(s) 523
DpnII GATC 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 474
FaeI CATG 2 cut(s) 134, 278
FaiI YATR 5 cut(s) 132, 276, 416, 431, 529
FalI AAGNNNNNCTT 6 cut(s) 36, 68, 147, 179, 243, 275
FatI CATG 2 cut(s) 130, 274
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 2 cut(s) 293, 422
GluI GCNGC 1 cut(s) 419
Hin1II CATG 2 cut(s) 134, 278
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 2 cut(s) 29, 231
HphI GGTGA 2 cut(s) 210, 439
Hpy188I TCNGA 4 cut(s) 28, 149, 322, 501
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4V TGCA 2 cut(s) 365, 418
HpyF3I CTNAG 2 cut(s) 119, 474
Hsp92II CATG 2 cut(s) 134, 278
Kzo9I GATC 1 cut(s) 521
LmnI GCTCC 2 cut(s) 63, 143
LpnPI CCDG 5 cut(s) 188, 207, 241, 365, 461
Lsp1109I GCAGC 1 cut(s) 430
MaeI CTAG 2 cut(s) 293, 422
MaeIII GTNAC 1 cut(s) 440
MalI GATC 1 cut(s) 523
MboI GATC 1 cut(s) 521
MboII GAAGA 3 cut(s) 75, 298, 407
MfeI CAATTG 1 cut(s) 266
MluCI AATT 3 cut(s) 266, 323, 455
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 524
MnlI CCTC 8 cut(s) 24, 71, 102, 128, 170, 328, 455, 483
MseI TTAA 4 cut(s) 18, 177, 326, 344
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 367
NdeII GATC 1 cut(s) 521
NheI GCTAGC 1 cut(s) 292
NlaIII CATG 2 cut(s) 134, 278
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 420
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 177
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 4 cut(s) 18, 177, 326, 344
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 1 cut(s) 521
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 225
SetI ASST 9 cut(s) 49, 125, 172, 201, 294, 298, 320, 423, 447
Sse9I AATT 3 cut(s) 266, 323, 455
SsiI CCGC 1 cut(s) 463
SspMI CTAG 2 cut(s) 293, 422
TaaI ACNGT 1 cut(s) 451
TaqI TCGA 2 cut(s) 516, 524
TasI AATT 3 cut(s) 266, 323, 455
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 4 cut(s) 18, 177, 326, 344
Tru9I TTAA 4 cut(s) 18, 177, 326, 344
TseI GCWGC 1 cut(s) 418
TspDTI ATGAA 4 cut(s) 147, 263, 264, 404
TspGWI ACGGA 1 cut(s) 167
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 2 cut(s) 293, 422
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.