Rh1CG245000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000693
Physical Location & Seq
Reverse (-)
50594067 .. 50599048
4982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG245000.1

Sequence Viewer

Length: 360 bp
ATGGATAAGGTGAAGACACTGACCAAGGAGGAATATGTACCGGTTGATGGAAGGTCCTCAGCTTTGGTGGAGTTTCTCCGGCAAGATATTGTCAATGGAAATTTGGACAGAGTGAAAGAATGTATGGCCATAGACAAGAATATTGGCGCAAAAGACGGCAGAGTTTCACTCATCAACACTATTGGCCGGGAAGAAAAGACACCTCTTTTCATTGCTCTAGAGTACTACAAGAAGGCCAAGGAATGCTTCCATTACTTGATGGATAATGGTGTTTCTATCGTAAACTCGAGCAAAGAAGGTGACGAGTTAGCCATGGACTGTGCTTTGGATTTCGAGCGGTATATTTTCCAAACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.6

Weight (kDa)

5.24

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 337
AciI CCGC 1 cut(s) 337
AcoI YGGCCR 2 cut(s) 126, 184
AcsI RAATTY 1 cut(s) 100
AfaI GTAC 2 cut(s) 39, 224
AfiI CCNNNNNNNGG 1 cut(s) 47
AgeI ACCGGT 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 3 cut(s) 126, 184, 234
ApoI RAATTY 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 40
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 22, 311
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 41, 253
BceAI ACGGC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 188
BfaI CTAG 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 153, 185
Bpu10I CCTNAGC 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 24, 237, 312
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 24, 237, 312
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 72
BshFI GGCC 3 cut(s) 128, 186, 236
BshTI ACCGGT 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 41, 79, 187
BslI CCNNNNNNNGG 1 cut(s) 47
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 3 cut(s) 128, 186, 236
BsoBI CYCGRG 1 cut(s) 286
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 1 cut(s) 337
BspANI GGCC 3 cut(s) 128, 186, 236
BspCNI CTCAG 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 3 cut(s) 24, 237, 312
BssT1I CCWWGG 3 cut(s) 24, 237, 312
Bst4CI ACNGT 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 3 cut(s) 128, 186, 236
BtgI CCRYGG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 38, 223
CspAI ACCGGT 1 cut(s) 40
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 62, 128, 186, 236, 311
CviKI_1 RGCY 5 cut(s) 62, 128, 186, 236, 311
CviQI GTAC 2 cut(s) 38, 223
DdeI CTNAG 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 126, 184
Eco130I CCWWGG 3 cut(s) 24, 237, 312
Eco47I GGWCC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 54
EcoT14I CCWWGG 3 cut(s) 24, 237, 312
ErhI CCWWGG 3 cut(s) 24, 237, 312
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 36, 125, 131, 314, 342
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 1 cut(s) 312
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 148
HaeIII GGCC 3 cut(s) 128, 186, 236
HapII CCGG 3 cut(s) 41, 79, 187
HhaI GCGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HpaII CCGG 3 cut(s) 41, 79, 187
HphI GGTGA 2 cut(s) 22, 311
Hpy166II GTNNAC 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 45, 226, 290
HpyCH4III ACNGT 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 54, 92, 200
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 337
MboII GAAGA 2 cut(s) 25, 203
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 100
MluNI TGGCCA 1 cut(s) 128
MnlI CCTC 3 cut(s) 22, 67, 213
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 3 cut(s) 41, 79, 187
MspR9I CCNGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 1 cut(s) 312
NlaIII CATG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 299
PaeR7I CTCGAG 1 cut(s) 286
PctI GAATGC 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PspXI VCTCGAGB 1 cut(s) 286
RsaI GTAC 2 cut(s) 39, 224
RsaNI GTAC 2 cut(s) 38, 223
Sau96I GGNCC 1 cut(s) 54
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 188
SetI ASST 5 cut(s) 12, 56, 64, 205, 301
Sfr274I CTCGAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 54
SlaI CTCGAG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 1 cut(s) 100
SsiI CCGC 1 cut(s) 337
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 3 cut(s) 24, 237, 312
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 287, 333
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 222
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 217
XhoI CTCGAG 1 cut(s) 286
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.