Rh6BG037000

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000693
Physical Location & Seq
Forward (+)
6142218 .. 6199868
57651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG037000.1

Sequence Viewer

Length: 699 bp
ATGCCATGGTTGTTCAAATGCAGGTCTTTAGCTACTCAGATCTACTTAGGTCTTTGGAAGCAAATCAAAGCCGCTCTAGCAGGAACTCATAGCTCTCTCAGCTCCAGTGTTTCTATCATCCCAAGTCCCACTATCCAGGTTCATGCCATATTGAAGCAGTATCTCACTTTAAGAGTGGTAGTTGGGAATGCAGCCTTTGAATTGCTGGATAGGATGAAAGAAGAGAGCAAGAAAGCACAAGTGAGAAAAGATGGTGTAGAGGGTCTGAAACCAAATGCAAGAGGACCTGGTCTTGTCACTTTTGGGGTTAGGTTTCCTATAATTTCCTTACGGGGGCTAGATGCCCATAATTGGGGAGCTGTCACTGCTTCGAGGGTTCTATCTCGGTCGCTTCCTTCATTTTTGACTTCCATCTTCTATTTTCCCTCATCTCTCACACGACTAGCACCGCTGCCAGCGCCTCTCTCACGTGTCCCTTCTCTCACTGCCAGAACCCCATCGCCTGATCGTGTGTTTGAACTTGTAAAACCTTTTCGCGATATCAAGGCCATATGGCAAGTTAGGGTTAAAGCAAGCAGAGCACTCCTTGATCTTGAATTCCACTGCAAAGGCATTGATGCAGCTTTGGCATTATTTATGAGATATTTAGATGAAGAGCCATCCTTCAGAGAGTATTTTGGCAAGAACATAAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

232

Amino Acids

25.89

Weight (kDa)

10.25

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 537
AciI CCGC 2 cut(s) 72, 449
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 649
AcvI CACGTG 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 333, 351, 352
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 5 cut(s) 16, 154, 200, 518, 596
AjnI CCWGG 2 cut(s) 135, 286
AluBI AGCT 5 cut(s) 32, 93, 102, 359, 623
AluI AGCT 5 cut(s) 32, 93, 102, 359, 623
Alw21I GWGCWC 1 cut(s) 583
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 3 cut(s) 191, 451, 620
ApoI RAATTY 1 cut(s) 596
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BbrPI CACGTG 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 3 cut(s) 203, 438, 632
BccI CCATC 4 cut(s) 245, 419, 505, 667
BciT130I CCWGG 2 cut(s) 137, 288
BfaI CTAG 3 cut(s) 77, 338, 443
BfoI RGCGCY 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 12
BglII AGATCT 1 cut(s) 39
BisI GCNGC 4 cut(s) 72, 192, 452, 621
BlsI GCNGC 4 cut(s) 73, 193, 453, 622
Bme1390I CCNGG 2 cut(s) 137, 288
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 2 cut(s) 137, 288
BmsI GCATC 2 cut(s) 331, 607
BpmI CTGGAG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 351, 352
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 137, 288
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 3 cut(s) 117, 219, 659
BseLI CCNNNNNNNGG 3 cut(s) 333, 351, 352
BseMII CTCAG 2 cut(s) 50, 112
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 203, 438, 632
Bsh1236I CGCG 1 cut(s) 537
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 548
BsiEI CGRYCG 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 583
BslFI GGGAC 2 cut(s) 111, 458
BslI CCNNNNNNNGG 3 cut(s) 333, 351, 352
BsmFI GGGAC 2 cut(s) 111, 458
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 3 cut(s) 39, 505, 589
Bsp19I CCATGG 1 cut(s) 5
Bsp68I TCGCGA 1 cut(s) 537
BspACI CCGC 2 cut(s) 72, 449
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 2 cut(s) 49, 111
BspFNI CGCG 1 cut(s) 537
BspMI ACCTGC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 648
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 3 cut(s) 39, 505, 589
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 137, 288
Bst6I CTCTTC 2 cut(s) 216, 648
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 456, 574
BstDEI CTNAG 3 cut(s) 36, 46, 98
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 3 cut(s) 117, 219, 659
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 3 cut(s) 42, 508, 592
BstMBI GATC 3 cut(s) 39, 505, 589
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 6 cut(s) 77, 99, 365, 457, 578, 626
BstNI CCWGG 2 cut(s) 137, 288
BstSCI CCNGG 2 cut(s) 135, 286
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 3 cut(s) 203, 438, 632
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 548
BtgI CCRYGG 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 3 cut(s) 117, 219, 659
BtsI GCAGTG 3 cut(s) 363, 483, 601
BtsIMutI CAGTG 4 cut(s) 112, 363, 483, 601
BtuMI TCGCGA 1 cut(s) 537
BveI ACCTGC 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 456, 574
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 286
CviAII CATG 3 cut(s) 6, 143, 696
DdeI CTNAG 3 cut(s) 36, 46, 98
DpnI GATC 3 cut(s) 41, 507, 591
DpnII GATC 3 cut(s) 39, 505, 589
Eam1104I CTCTTC 2 cut(s) 216, 648
EarI CTCTTC 2 cut(s) 216, 648
Eco130I CCWWGG 1 cut(s) 5
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 649
Eco72I CACGTG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 135, 286
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 3 cut(s) 9, 146, 699
FaqI GGGAC 2 cut(s) 111, 458
FatI CATG 3 cut(s) 5, 142, 695
FauNDI CATATG 1 cut(s) 551
Fnu4HI GCNGC 4 cut(s) 72, 192, 452, 621
FokI GGATG 3 cut(s) 104, 226, 646
Fsp4HI GCNGC 4 cut(s) 72, 192, 452, 621
FspBI CTAG 3 cut(s) 77, 338, 443
GlaI GCGC 1 cut(s) 459
GluI GCNGC 4 cut(s) 72, 192, 452, 621
GsuI CTGGAG 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 1 cut(s) 548
HhaI GCGC 1 cut(s) 460
Hin1II CATG 3 cut(s) 9, 146, 699
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
Hpy188I TCNGA 3 cut(s) 39, 267, 668
Hpy188III TCNNGA 2 cut(s) 536, 593
HpyAV CCTTC 3 cut(s) 405, 486, 673
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 5 cut(s) 21, 191, 278, 606, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 99, 365, 457, 578, 626
HpyF3I CTNAG 3 cut(s) 36, 46, 98
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 3 cut(s) 9, 146, 699
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 3 cut(s) 39, 505, 589
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 2 cut(s) 107, 356
Lsp1109I GCAGC 3 cut(s) 203, 438, 632
LweI GCATC 2 cut(s) 331, 607
MabI ACCWGGT 1 cut(s) 286
MaeI CTAG 3 cut(s) 77, 338, 443
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 295, 361
MalI GATC 3 cut(s) 41, 507, 591
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 39, 505, 589
MboII GAAGA 3 cut(s) 233, 406, 665
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 4 cut(s) 200, 321, 349, 596
MnlI CCTC 5 cut(s) 253, 275, 366, 436, 471
MseI TTAA 2 cut(s) 170, 567
MspA1I CMGCKG 1 cut(s) 451
MspR9I CCNGG 2 cut(s) 137, 288
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 2 cut(s) 137, 288
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 6 cut(s) 77, 99, 365, 457, 578, 626
NcoI CCATGG 1 cut(s) 5
NdeI CATATG 1 cut(s) 551
NdeII GATC 3 cut(s) 39, 505, 589
NlaIII CATG 3 cut(s) 9, 146, 699
NmuCI GTSAC 2 cut(s) 295, 361
NruI TCGCGA 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 193
PflFI GACNNNGTC 1 cut(s) 288
PkrI GCNGC 4 cut(s) 73, 193, 453, 622
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 470
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 135, 286
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 2 cut(s) 135, 286
PspPI GGNCC 1 cut(s) 284
PspPPI RGGWCCY 1 cut(s) 284
PsuI RGATCY 1 cut(s) 39
PsyI GACNNNGTC 1 cut(s) 288
RruI TCGCGA 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 2 cut(s) 170, 567
SatI GCNGC 4 cut(s) 72, 192, 452, 621
Sau3AI GATC 3 cut(s) 39, 505, 589
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 137, 288
SduI GDGCHC 1 cut(s) 583
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 2 cut(s) 331, 607
SinI GGWCC 1 cut(s) 284
Sse9I AATT 4 cut(s) 200, 321, 349, 596
SsiI CCGC 2 cut(s) 72, 449
SspMI CTAG 3 cut(s) 77, 338, 443
StyD4I CCNGG 2 cut(s) 135, 286
StyI CCWWGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 371
TaqII GACCGA 1 cut(s) 375
TasI AATT 4 cut(s) 200, 321, 349, 596
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 170, 567
Tru9I TTAA 2 cut(s) 170, 567
TscAI CASTG 4 cut(s) 112, 370, 490, 608
TseFI GTSAC 2 cut(s) 295, 361
TseI GCWGC 3 cut(s) 191, 451, 620
Tsp45I GTSAC 2 cut(s) 295, 361
TspDTI ATGAA 4 cut(s) 131, 230, 387, 666
TspRI CASTG 4 cut(s) 112, 370, 490, 608
Tth111I GACNNNGTC 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 596
XspI CTAG 3 cut(s) 77, 338, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.