Rh5AG516600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000693
Physical Location & Seq
Reverse (-)
87665709 .. 87667891
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG516600.1

Sequence Viewer

Length: 312 bp
ATGCCATGGTTGTTCAAATGCAAGTCTTTGGCTACTCAGATCTACTTAGGTCTTTGGAAGCAAATCAAAGCCGCTCTAGCAGGAACTCATAGCTCTCTCAGCTCCAGCGTTTCTATCATCCCAAGTCCCACTATCCAGCGGATATTGAGGGTGTGCAAGGTGACCGCTAGGGCTGGAATTTGGAACCGTAAAGCCGGAGGAACCGTACCGAAAGTCTCGGTTCAGTTCGGTTCTACTACATATGTGTTTGCATTTTTCTCTGTTCGGTCCCTTGCAATGTTTACTCGGTTCGGTTTTGGTGCTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.34

Weight (kDa)

11.45

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 3 cut(s) 72, 139, 165
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 207
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 2 cut(s) 93, 102
AluI AGCT 2 cut(s) 93, 102
Alw26I GTCTC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 2 cut(s) 77, 168
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 185, 202, 269
BpmI CTGGAG 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 50, 112
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 2 cut(s) 111, 253
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 2 cut(s) 111, 253
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 3 cut(s) 72, 139, 165
BspCNI CTCAG 2 cut(s) 49, 111
BspLI GGNNCC 3 cut(s) 185, 202, 269
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 188, 205
BstDEI CTNAG 3 cut(s) 36, 46, 98
BstDSI CCRYGG 1 cut(s) 5
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 77, 99
BstPI GGTNACC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 6
CviJI RGCY 6 cut(s) 32, 71, 93, 102, 173, 194
CviKI_1 RGCY 6 cut(s) 32, 71, 93, 102, 173, 194
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 3 cut(s) 36, 46, 98
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 1 cut(s) 9
FaiI YATR 4 cut(s) 7, 90, 241, 243
FaqI GGGAC 2 cut(s) 111, 253
FatI CATG 1 cut(s) 5
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 77, 168
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 88
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 9
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 282
HpyCH4III ACNGT 2 cut(s) 188, 205
HpyCH4V TGCA 4 cut(s) 21, 156, 251, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 99
HpyF3I CTNAG 3 cut(s) 36, 46, 98
Hsp92II CATG 1 cut(s) 9
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 66, 118, 149, 159, 208
MaeI CTAG 2 cut(s) 77, 168
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 74
MboI GATC 1 cut(s) 39
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 177
MnlI CCTC 2 cut(s) 141, 191
MseI TTAA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 77, 99
NcoI CCATGG 1 cut(s) 5
NdeI CATATG 1 cut(s) 241
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 3 cut(s) 185, 202, 269
NmuCI GTSAC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 185, 202, 269
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 267
SetI ASST 4 cut(s) 52, 95, 104, 162
SinI GGWCC 1 cut(s) 267
Sse9I AATT 1 cut(s) 177
SsiI CCGC 3 cut(s) 72, 139, 165
SspMI CTAG 2 cut(s) 77, 168
StyI CCWWGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 188, 205
TaqII GACCGA 1 cut(s) 255
TasI AATT 1 cut(s) 177
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 177
XspI CTAG 2 cut(s) 77, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.