Rh6AG088200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
13202128 .. 13208209
6082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG088200.1

Sequence Viewer

Length: 255 bp
ATGACCGGACTCGTCGGCGTCTTATACAGCTCGGCAACCTTGCAGAGGTCTGCTATTCATTTACATCAGTTGCTTAGAGGTATTCGGAAGCTTTGGAAGGTGTACGACAGGGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGAATTAAAGCAGTATCCCAATTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.7

Weight (kDa)

9.45

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 253
AclWI GGATC 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 4 cut(s) 30, 91, 131, 247
AluI AGCT 4 cut(s) 30, 91, 131, 247
AlwI GGATC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 128, 244
BbvI GCAGC 1 cut(s) 140
BciVI GTATCC 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 2 cut(s) 129, 245
BlsI GCNGC 2 cut(s) 130, 246
BmsI GCATC 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 199
BseGI GGATG 2 cut(s) 124, 219
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 45
BsmI GAATGC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 128
BssMI GATC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 124, 219
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 140
BsuI GTATCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 124, 219
CseI GACGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 4 cut(s) 30, 91, 131, 247
CviKI_1 RGCY 4 cut(s) 30, 91, 131, 247
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 43
FaiI YATR 3 cut(s) 25, 242, 253
Fnu4HI GCNGC 2 cut(s) 129, 245
FokI GGATG 2 cut(s) 131, 226
Fsp4HI GCNGC 2 cut(s) 129, 245
GluI GCNGC 2 cut(s) 129, 245
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 2 cut(s) 9, 200
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 91
HpyCH4V TGCA 5 cut(s) 43, 122, 128, 191, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 19, 94, 131, 191
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 109
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 233
MluCI AATT 3 cut(s) 140, 149, 166
MlyI GAGTC 1 cut(s) 3
MnlI CCTC 2 cut(s) 39, 71
MseI TTAA 2 cut(s) 152, 170
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 11
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 130, 246
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
PsiI TTATAA 1 cut(s) 253
PstI CTGCAG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 152, 170
SatI GCNGC 2 cut(s) 129, 245
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 3
SetI ASST 8 cut(s) 32, 41, 50, 82, 93, 102, 133, 249
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 126
SgeI CNNG 9 cut(s) 18, 23, 43, 52, 121, 158, 204, 218, 241
Sse9I AATT 3 cut(s) 140, 149, 166
TasI AATT 3 cut(s) 140, 149, 166
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 152, 170
Tru9I TTAA 2 cut(s) 152, 170
TseI GCWGC 2 cut(s) 128, 244
TspDTI ATGAA 2 cut(s) 47, 230
XagI CCTNNNNNAGG 1 cut(s) 43
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.