Rh5AG168900
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000693
Physical Location & Seq
Forward (+)
18658425 .. 18675583
17159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG168900.1

Sequence Viewer

Length: 735 bp
ATGCTTCGTTCATTACCATATTTCAGGTATTCAGTTCTCAAATGTTTACCCGAGAAAATGTTGAAGGATCTGATGAGAGTGGTAGTCAAGGAATTAAAGCAGTATCCCACTTTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAACAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGACATATTCTCATCGTCATAGCCATGGTGGAGAATTTCTTGACTGGAGGAGAATTTCTTGGGGAATTCATGAATCTGGAGGAGAATTTCTTCCAGTATTTCCAGGAAGACGAAGAGCACACTACCTTCCCCAAGCTCCCTGTCCCTACTACTTCAACTCCATTTGACGATTTCACCCTTCATCTGGTGGAGCAGCACAGAGAGACATTGGAGGAGACCACCCAAAATGGGTTCAGGCCTTGGAAGTGGAAAAGTCCATTGAGTCCAATTCCCAAGAGAATGTACCCGGTGTTGTTCGTGTCATTCCTCACAGGACATGGTACTCATACATCATCCACTGCAGCCGGTGGTTTTATAGAAAATGCAAGTTTTATGGGAGTTGATTCAGGATTGGCAAGAGGAGGTGCTCCATCATCTTGGTTAGCTATTTACAAAGTTTGTTGGGCTACTGGTGGCTGCATCATCTTGGTTATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

244

Amino Acids

27.88

Weight (kDa)

5.45

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 5 cut(s) 218, 289, 308, 320, 340
AfaI GTAC 2 cut(s) 539, 577
AfiI CCNNNNNNNGG 2 cut(s) 439, 483
AgsI TTSAA 5 cut(s) 64, 137, 218, 248, 411
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 4 cut(s) 184, 232, 391, 680
AluI AGCT 4 cut(s) 184, 232, 391, 680
Alw21I GWGCWC 2 cut(s) 375, 664
Alw26I GTCTC 2 cut(s) 452, 464
AlwI GGATC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 4 cut(s) 181, 448, 596, 711
ApoI RAATTY 5 cut(s) 218, 289, 308, 320, 340
Asp700I GAANNNNTTC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 202, 421
AvaI CYCGRG 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 375, 664
BbvI GCAGC 4 cut(s) 193, 460, 608, 698
BccI CCATC 1 cut(s) 673
BciT130I CCWGG 1 cut(s) 359
BciVI GTATCC 1 cut(s) 114
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 452, 464
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 594
BfuI GTATCC 1 cut(s) 114
BisI GCNGC 4 cut(s) 182, 449, 597, 712
BlsI GCNGC 4 cut(s) 183, 450, 598, 713
Bme1390I CCNGG 2 cut(s) 359, 542
BmeT110I CYCGRG 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 359, 542
BmsI GCATC 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 2 cut(s) 321, 353
BpuMI CCSGG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 279, 494
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 483
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 3 cut(s) 304, 349, 709
Bse21I CCTNAGG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 279, 494
BseGI GGATG 2 cut(s) 156, 587
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 439, 483
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 3 cut(s) 304, 349, 709
BseRI GAGGAG 4 cut(s) 318, 350, 482, 669
BseXI GCAGC 4 cut(s) 193, 460, 608, 698
BshFI GGCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 375, 664
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 542, 600
BslFI GGGAC 2 cut(s) 270, 383
BslI CCNNNNNNNGG 2 cut(s) 439, 483
BsmAI GTCTC 2 cut(s) 452, 464
BsmFI GGGAC 2 cut(s) 270, 383
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 493
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 375, 664
Bsp143I GATC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 599
BsrI ACTGG 3 cut(s) 304, 349, 709
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 2 cut(s) 279, 494
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 2 cut(s) 279, 494
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 153, 363
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 279
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 2 cut(s) 156, 587
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 452, 464
BstMBI GATC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 359
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 357, 540
BstSFI CTRYAG 1 cut(s) 594
BstV1I GCAGC 4 cut(s) 193, 460, 608, 698
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 672
BstYI RGATCY 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 237
BsuI GTATCC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 493
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 156, 587
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 599
Csp6I GTAC 2 cut(s) 538, 576
CviAII CATG 3 cut(s) 280, 325, 572
CviJI RGCY 9 cut(s) 184, 232, 278, 391, 493, 599, 680, 701, 711
CviKI_1 RGCY 9 cut(s) 184, 232, 278, 391, 493, 599, 680, 701, 711
CviQI GTAC 2 cut(s) 538, 576
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 153, 363
EarI CTCTTC 2 cut(s) 153, 363
Eco130I CCWWGG 2 cut(s) 279, 494
Eco147I AGGCCT 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 2 cut(s) 279, 494
ErhI CCWWGG 2 cut(s) 279, 494
FaeI CATG 3 cut(s) 283, 328, 575
FaqI GGGAC 2 cut(s) 270, 383
FatI CATG 3 cut(s) 279, 324, 571
Fnu4HI GCNGC 4 cut(s) 182, 449, 597, 712
FokI GGATG 2 cut(s) 163, 574
Fsp4HI GCNGC 4 cut(s) 182, 449, 597, 712
FspBI CTAG 1 cut(s) 185
GluI GCNGC 4 cut(s) 182, 449, 597, 712
GsuI CTGGAG 2 cut(s) 321, 353
HaeIII GGCC 1 cut(s) 493
HapII CCGG 2 cut(s) 542, 600
Hin1II CATG 3 cut(s) 283, 328, 575
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 137, 328, 517, 638
HpaII CCGG 2 cut(s) 542, 600
HphI GGTGA 2 cut(s) 202, 421
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 5 cut(s) 239, 295, 325, 332, 642
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 58, 391, 443
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 128, 181, 596, 620, 714
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 3 cut(s) 283, 328, 575
Kzo9I GATC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 396, 445, 667
Lsp1109I GCAGC 4 cut(s) 193, 460, 608, 698
LweI GCATC 1 cut(s) 723
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 4 cut(s) 170, 337, 374, 380
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 375, 664
MluCI AATT 7 cut(s) 92, 218, 289, 308, 320, 340, 522
MlyI GAGTC 1 cut(s) 526
MnlI CCTC 8 cut(s) 218, 246, 296, 328, 460, 572, 647, 650
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 2 cut(s) 542, 600
MspR9I CCNGG 2 cut(s) 359, 542
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 359
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 1 cut(s) 279
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 283, 328, 575
PagI TCATGA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 3 cut(s) 137, 328, 638
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 4 cut(s) 183, 450, 598, 713
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 357
PspEI GGTNACC 1 cut(s) 203
PspGI CCWGG 1 cut(s) 357
PstI CTGCAG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 539, 577
RsaNI GTAC 2 cut(s) 538, 576
RseI CAYNNNNRTG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 4 cut(s) 182, 449, 597, 712
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 2 cut(s) 359, 542
SduI GDGCHC 2 cut(s) 375, 664
SetI ASST 8 cut(s) 29, 186, 210, 234, 383, 393, 661, 682
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 7 cut(s) 92, 218, 289, 308, 320, 340, 522
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 1 cut(s) 226
SspMI CTAG 1 cut(s) 185
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 357, 540
StyI CCWWGG 2 cut(s) 279, 494
TaaI ACNGT 1 cut(s) 214
TasI AATT 7 cut(s) 92, 218, 289, 308, 320, 340, 522
TfiI GAWTC 3 cut(s) 137, 328, 638
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 598
TseI GCWGC 4 cut(s) 181, 448, 596, 711
TspDTI ATGAA 4 cut(s) 167, 313, 341, 425
TspRI CASTG 1 cut(s) 598
XapI RAATTY 5 cut(s) 218, 289, 308, 320, 340
XmnI GAANNNNTTC 1 cut(s) 344
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.