RLG00000023913
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000693
Physical Location & Seq
Reverse (-)
29893794 .. 29899907
6114 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023913

Sequence Viewer

Length: 672 bp
ATGGCTCCTCCTTACCCTCCGTTGCGATCGCGTTACCGTTCTGAGGCTCCTCCTCCATTGTGCGGAGGAGGCGGAGGAGCGAGTTCGAAGGAGGTGGCCGCCCAGAGGCTACGCTATCCCTTCTCCTCTTCAGCTTCAGATCTAACAGCGGAGGACGACTCTCAGTCTGCTATGCAGCGCATCCAATGGTTGCCCCTCCACCTGACGTCGGTCGGAATTTCACCGGACGATGACTACCGCATCCAATGGCTATCCAGCCATATAGTGTCGCATGGCCGTCTCGACTGCGTCGATTGGGACGAATTAAAGAAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGACTTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGAAATCCGACACACTCACTTTTCGACAGATATAACGATTCCTACCTCCGGCAGGTTGCTTCGTTAGGGCTTGCTTATGGCGGCGCAAAGTTTCTGGCCTGGGTAGATGGCTTCTCAGCTCTCTCCGGTCAGCCTGGGAAGGATAAAGGCAGAGTTCCTCTTCGTCAACGTGCTTCTAAACTTGTCGAACTCTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

224

Amino Acids

25.0

Weight (kDa)

6.44

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 514
AccII CGCG 1 cut(s) 31
AciI CCGC 7 cut(s) 63, 72, 99, 149, 238, 442, 552
AcoI YGGCCR 2 cut(s) 96, 274
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 2 cut(s) 114, 120
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 6 cut(s) 43, 62, 105, 208, 519, 523
AgsI TTSAA 2 cut(s) 353, 464
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 569, 604
AluBI AGCT 4 cut(s) 134, 400, 448, 590
AluI AGCT 4 cut(s) 134, 400, 448, 590
Alw26I GTCTC 1 cut(s) 284
AoxI GGCC 3 cut(s) 96, 274, 567
ApeKI GCWGC 2 cut(s) 175, 397
ApoI RAATTY 1 cut(s) 216
AsiSI GCGATCGC 1 cut(s) 29
AspLEI GCGC 2 cut(s) 180, 557
AsuHPI GGTGA 2 cut(s) 213, 418
AsuII TTCGAA 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 453
BbvI GCAGC 2 cut(s) 187, 409
BccI CCATC 1 cut(s) 572
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 571, 606
BciVI GTATCC 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 514
BfuI GTATCC 1 cut(s) 324
BglII AGATCT 1 cut(s) 139
BisI GCNGC 4 cut(s) 99, 176, 398, 553
BlsI GCNGC 4 cut(s) 100, 177, 399, 554
Bme1390I CCNGG 2 cut(s) 571, 606
BmeRI GACNNNNNGTC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 6, 48
BmrFI CCNGG 2 cut(s) 571, 606
BmsI GCATC 2 cut(s) 189, 249
BoxI GACNNNNGTC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 143, 175
Bpu14I TTCGAA 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 352
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 570, 605
BsaWI WCCGGW 2 cut(s) 223, 596
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 62, 105, 208, 519, 523
Bse21I CCTNAGG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 352
BseBI CCWGG 2 cut(s) 571, 606
BseDI CCNNGG 2 cut(s) 570, 605
BseGI GGATG 3 cut(s) 180, 240, 372
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 6 cut(s) 43, 62, 105, 208, 519, 523
BseMII CTCAG 4 cut(s) 33, 176, 467, 600
BseRI GAGGAG 5 cut(s) 39, 42, 81, 90, 115
BseXI GCAGC 2 cut(s) 187, 409
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 2 cut(s) 29, 213
BshFI GGCC 3 cut(s) 98, 276, 569
BsiEI CGRYCG 2 cut(s) 29, 213
BsiSI CCGG 3 cut(s) 224, 520, 597
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 6 cut(s) 43, 62, 105, 208, 519, 523
BsmAI GTCTC 1 cut(s) 284
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 3 cut(s) 98, 276, 569
Bsp119I TTCGAA 1 cut(s) 86
Bsp143I GATC 2 cut(s) 26, 139
BspACI CCGC 7 cut(s) 63, 72, 99, 149, 238, 442, 552
BspANI GGCC 3 cut(s) 98, 276, 569
BspCNI CTCAG 4 cut(s) 34, 175, 466, 599
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 6, 48
BspMI ACCTGC 1 cut(s) 514
BspT104I TTCGAA 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 570, 605
BssMI GATC 2 cut(s) 26, 139
BssNI GRCGYC 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 571, 606
Bst4CI ACNGT 2 cut(s) 38, 430
Bst6I CTCTTC 3 cut(s) 133, 369, 636
BstACI GRCGYC 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 446, 543
BstDEI CTNAG 4 cut(s) 42, 162, 453, 586
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 180, 240, 372
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 2 cut(s) 180, 557
BstKTI GATC 2 cut(s) 29, 142
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 26, 139
BstMCI CGRYCG 2 cut(s) 29, 213
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 2 cut(s) 571, 606
BstPAI GACNNNNGTC 1 cut(s) 209
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 569, 604
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 187, 409
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 453
BsuI GTATCC 1 cut(s) 324
BsuRI GGCC 3 cut(s) 98, 276, 569
BtsCI GGATG 3 cut(s) 180, 240, 372
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 2 cut(s) 446, 543
CfoI GCGC 2 cut(s) 180, 557
CseI GACGC 1 cut(s) 277
CviAII CATG 1 cut(s) 272
DdeI CTNAG 4 cut(s) 42, 162, 453, 586
DpnI GATC 2 cut(s) 28, 141
DpnII GATC 2 cut(s) 26, 139
DriI GACNNNNNGTC 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 96, 274
Eam1104I CTCTTC 3 cut(s) 133, 369, 636
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 3 cut(s) 133, 369, 636
EciI GGCGGA 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 114, 120
Eco81I CCTNAGG 1 cut(s) 453
Eco91I GGTNACC 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 569, 604
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 1 cut(s) 275
FaiI YATR 8 cut(s) 173, 261, 263, 273, 395, 410, 504, 549
FaqI GGGAC 1 cut(s) 311
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 99, 176, 398, 553
FokI GGATG 3 cut(s) 167, 227, 379
Fsp4HI GCNGC 4 cut(s) 99, 176, 398, 553
FspBI CTAG 1 cut(s) 401
GlaI GCGC 2 cut(s) 179, 556
GluI GCNGC 4 cut(s) 99, 176, 398, 553
HaeIII GGCC 3 cut(s) 98, 276, 569
HapII CCGG 3 cut(s) 224, 520, 597
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 180, 557
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 2 cut(s) 178, 555
HinP1I GCGC 2 cut(s) 178, 555
HincII GTYRAC 2 cut(s) 433, 638
HindII GTYRAC 2 cut(s) 433, 638
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 158, 353, 509
HpaII CCGG 3 cut(s) 224, 520, 597
HphI GGTGA 2 cut(s) 213, 418
Hpy166II GTNNAC 2 cut(s) 433, 638
Hpy188I TCNGA 4 cut(s) 43, 139, 215, 480
Hpy188III TCNNGA 2 cut(s) 281, 455
Hpy8I GTNNAC 2 cut(s) 433, 638
Hpy99I CGWCG 2 cut(s) 211, 293
HpyAV CCTTC 3 cut(s) 82, 130, 604
HpyCH4III ACNGT 2 cut(s) 38, 430
HpyCH4IV ACGT 2 cut(s) 206, 640
HpyCH4V TGCA 3 cut(s) 175, 344, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 4 cut(s) 42, 162, 453, 586
HpySE526I ACGT 2 cut(s) 206, 640
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 2 cut(s) 178, 555
Kzo9I GATC 2 cut(s) 26, 139
LmnI GCTCC 3 cut(s) 10, 52, 77
Lsp1109I GCAGC 2 cut(s) 187, 409
LweI GCATC 2 cut(s) 189, 249
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 206, 640
MaeIII GTNAC 2 cut(s) 32, 419
MalI GATC 2 cut(s) 28, 141
MboI GATC 2 cut(s) 26, 139
MboII GAAGA 3 cut(s) 120, 386, 623
MflI RGATCY 1 cut(s) 139
MluCI AATT 2 cut(s) 216, 302
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 193, 503
MseI TTAA 2 cut(s) 305, 323
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 3 cut(s) 224, 520, 597
MspR9I CCNGG 2 cut(s) 571, 606
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 2 cut(s) 571, 606
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 2 cut(s) 26, 139
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 6, 48
NspV TTCGAA 1 cut(s) 86
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 297
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 353, 509
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 4 cut(s) 100, 177, 399, 554
Ple19I CGATCG 1 cut(s) 29
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PshAI GACNNNNGTC 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 569, 604
PspEI GGTNACC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 569, 604
PspN4I GGNNCC 2 cut(s) 6, 48
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 287
PvuI CGATCG 1 cut(s) 29
RgaI GCGATCGC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 305, 323
SatI GCNGC 4 cut(s) 99, 176, 398, 553
Sau3AI GATC 2 cut(s) 26, 139
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 571, 606
SfaAI GCGATCGC 1 cut(s) 29
SfaNI GCATC 2 cut(s) 189, 249
SfuI TTCGAA 1 cut(s) 86
SgfI GCGATCGC 1 cut(s) 29
Sse9I AATT 2 cut(s) 216, 302
SsiI CCGC 7 cut(s) 63, 72, 99, 149, 238, 442, 552
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 569, 604
TaaI ACNGT 2 cut(s) 38, 430
TaiI ACGT 2 cut(s) 209, 643
TaqI TCGA 5 cut(s) 86, 282, 291, 495, 657
TaqII GACCGA 1 cut(s) 199
TasI AATT 2 cut(s) 216, 302
TauI GCSGC 2 cut(s) 101, 555
TfiI GAWTC 2 cut(s) 353, 509
Tru1I TTAA 2 cut(s) 305, 323
Tru9I TTAA 2 cut(s) 305, 323
TseI GCWGC 2 cut(s) 175, 397
TspDTI ATGAA 1 cut(s) 383
TspGWI ACGGA 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 1 cut(s) 401
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.