Rh4CG085200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000693
Physical Location & Seq
Forward (+)
15554747 .. 15563714
8968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG085200.1

Sequence Viewer

Length: 516 bp
ATGGGTCAAGAACTTGAAGAAGAAGCAGCGCCGCCGGTCATCCTCCAATGGCAAGATTTGGGTGAGTTGCCAAAAAACGAGCTGATTAATAAGGCTCCTGAAGACAATACCCCTCCTCGTGATTCTATCCCGTTCCCAGAAGGGGCCATGTCATTGGAATTTGATATCCTCAATGACCTTGTGGAGGTGTGGGATGAAACTGCAGTTGATCCTAAATTGCTGGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTGGGAATGCAAGATTTGAATCGCTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTCAGGATATTGAAAAGGGGGGAAATCCGACACACTCACTTTTCGACAGAGATAACGATTCCTACCTCCAGCAGGTTGCTATTGCTGCAGTTTTGAAATGCTGCTGTCATGCTTTCCACAAGCTACTATCATTAGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

171

Amino Acids

19.42

Weight (kDa)

4.43

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AciI CCGC 2 cut(s) 32, 364
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 158, 356
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 3 cut(s) 142, 184, 445
AgsI TTSAA 5 cut(s) 17, 275, 356, 386, 469
AluBI AGCT 4 cut(s) 82, 322, 370, 496
AluI AGCT 4 cut(s) 82, 322, 370, 496
AlwI GGATC 1 cut(s) 203
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 26, 319, 458, 474
ApoI RAATTY 2 cut(s) 158, 356
AseI ATTAAT 1 cut(s) 87
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 74, 340
AxyI CCTNAGG 1 cut(s) 375
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 4 cut(s) 38, 331, 445, 461
BciVI GTATCC 1 cut(s) 246
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 2 cut(s) 201, 459
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 436
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 5 cut(s) 27, 32, 320, 459, 475
BlsI GCNGC 5 cut(s) 28, 33, 321, 460, 476
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 96, 145
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 274
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 184, 445
Bse118I RCCGGY 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 274
BseGI GGATG 3 cut(s) 39, 199, 294
BseJI GATNNNNATC 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 142, 184, 445
BseMII CTCAG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 38, 331, 445, 461
BshFI GGCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 142, 184, 445
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 2 cut(s) 32, 364
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 96, 145
BspMAI CTGCAG 2 cut(s) 205, 463
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 1 cut(s) 208
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 375
BstEII GGTNACC 1 cut(s) 341
BstENI CCTNNNNNAGG 2 cut(s) 182, 443
BstF5I GGATG 3 cut(s) 39, 199, 294
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 341
BstSFI CTRYAG 2 cut(s) 201, 459
BstV1I GCAGC 4 cut(s) 38, 331, 445, 461
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 375
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 39, 199, 294
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 144
CviAII CATG 2 cut(s) 148, 482
CviJI RGCY 6 cut(s) 82, 95, 146, 322, 370, 496
CviKI_1 RGCY 6 cut(s) 82, 95, 146, 322, 370, 496
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 120
Eco81I CCTNAGG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 341
EcoNI CCTNNNNNAGG 2 cut(s) 182, 443
EcoO65I GGTNACC 1 cut(s) 341
EcoRV GATATC 1 cut(s) 166
FaeI CATG 2 cut(s) 151, 485
FaiI YATR 4 cut(s) 149, 317, 332, 483
FatI CATG 2 cut(s) 147, 481
Fnu4HI GCNGC 5 cut(s) 27, 32, 320, 459, 475
FokI GGATG 3 cut(s) 26, 206, 301
Fsp4HI GCNGC 5 cut(s) 27, 32, 320, 459, 475
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 30
GluI GCNGC 5 cut(s) 27, 32, 320, 459, 475
GsuI CTGGAG 1 cut(s) 425
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 151, 485
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 122, 275, 431
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 74, 340
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 4 cut(s) 8, 98, 119, 377
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 4 cut(s) 203, 266, 319, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 2 cut(s) 151, 485
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 48, 111, 150, 206, 266, 362, 431, 455
Lsp1109I GCAGC 4 cut(s) 38, 331, 445, 461
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 341
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 4 cut(s) 29, 32, 113, 308
MluCI AATT 4 cut(s) 158, 215, 224, 356
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 8 cut(s) 53, 123, 126, 178, 179, 356, 384, 449
MseI TTAA 3 cut(s) 87, 227, 245
MspI CCGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 151, 485
NlaIV GGNNCC 2 cut(s) 96, 145
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 122, 275, 431
PkrI GCNGC 5 cut(s) 28, 33, 321, 460, 476
PshBI ATTAAT 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 96, 145
PspPI GGNCC 1 cut(s) 144
PstI CTGCAG 2 cut(s) 205, 463
SaqAI TTAA 3 cut(s) 87, 227, 245
SatI GCNGC 5 cut(s) 27, 32, 320, 459, 475
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 144
SetI ASST 9 cut(s) 84, 180, 189, 324, 348, 372, 441, 450, 498
SfcI CTRYAG 2 cut(s) 201, 459
Sse9I AATT 4 cut(s) 158, 215, 224, 356
SsiI CCGC 2 cut(s) 32, 364
SspMI CTAG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 1 cut(s) 417
TasI AATT 4 cut(s) 158, 215, 224, 356
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 3 cut(s) 122, 275, 431
Tru1I TTAA 3 cut(s) 87, 227, 245
Tru9I TTAA 3 cut(s) 87, 227, 245
TseI GCWGC 4 cut(s) 26, 319, 458, 474
TspDTI ATGAA 2 cut(s) 210, 305
VspI ATTAAT 1 cut(s) 87
XagI CCTNNNNNAGG 2 cut(s) 182, 443
XapI RAATTY 2 cut(s) 158, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.