Rh3CG216500
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000693
Physical Location & Seq
Forward (+)
20057870 .. 20059206
1337 bp
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UTR
Exon/CDS
Intron
Rh3CG216500.1

Sequence Viewer

Length: 303 bp
ATGGCAGTCTCGACCGCGTCGACTGTGGCGCCGACCTCTGTGGCCTTCTTCCTTATTGAGGCCGCCTTCTTCCTAGCAGGGGCCACTCAGATTCAAATACTCAGGGTTCATGCCGTATTGAAGGAGCTGGCTCAGAAGTCTTTCAATGAATTAAAGCAGTATCCCACTTTAAGAGTGGAAGTTCGGAATGCAAGATTTGAATCACTGGATAGGATGAAAGAAGAGAGCAAGGAAGCAACTATGCAGCTAGTTGATATGGAGTGTGGTTACCTCACCGTTGAATTTTTCCGCAAGCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

100

Amino Acids

11.35

Weight (kDa)

6.58

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 35 - 92 1.7e-06 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 20
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 15, 63, 289
AcsI RAATTY 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 58, 79
AgsI TTSAA 5 cut(s) 95, 121, 145, 200, 281
AluBI AGCT 3 cut(s) 127, 247, 295
AluI AGCT 3 cut(s) 127, 247, 295
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 3 cut(s) 42, 60, 81
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 265
BanI GGYRCC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 98
BciVI GTATCC 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 74, 248
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 2 cut(s) 63, 245
BlsI GCNGC 2 cut(s) 64, 246
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 30, 82
BsaBI GATNNNNATC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 79
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 199
BseGI GGATG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 58, 79
BseMII CTCAG 3 cut(s) 101, 115, 146
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 44, 62, 83
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 58, 79
BsmAI GTCTC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 3 cut(s) 44, 62, 83
BspACI CCGC 3 cut(s) 15, 63, 289
BspANI GGCC 3 cut(s) 44, 62, 83
BspCNI CTCAG 3 cut(s) 100, 114, 145
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 30, 82
BspT107I GGYRCC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 25, 277
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 129, 293
BstDEI CTNAG 4 cut(s) 87, 101, 132, 300
BstEII GGTNACC 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 266
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 256
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 3 cut(s) 44, 62, 83
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 129, 293
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 1 cut(s) 6
CviAII CATG 1 cut(s) 110
CviJI RGCY 7 cut(s) 44, 62, 83, 127, 131, 247, 295
CviKI_1 RGCY 7 cut(s) 44, 62, 83, 127, 131, 247, 295
DdeI CTNAG 4 cut(s) 87, 101, 132, 300
DinI GGCGCC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 266
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
FaeI CATG 1 cut(s) 113
FaiI YATR 3 cut(s) 111, 242, 257
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 63, 245
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 63, 245
FspBI CTAG 2 cut(s) 74, 248
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 63, 245
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 44, 62, 83
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 91, 200
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 3 cut(s) 90, 135, 186
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 55, 76, 115
HpyCH4III ACNGT 2 cut(s) 25, 277
HpyCH4V TGCA 2 cut(s) 191, 244
HpyF3I CTNAG 4 cut(s) 87, 101, 132, 300
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 29
KasI GGCGCC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 4 cut(s) 63, 88, 113, 191
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 2 cut(s) 74, 248
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 3 cut(s) 40, 61, 233
MluCI AATT 2 cut(s) 149, 281
Mly113I GGCGCC 1 cut(s) 29
MnlI CCTC 3 cut(s) 46, 52, 281
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 2 cut(s) 152, 170
Mva1269I GAATGC 1 cut(s) 193
MvnI CGCG 1 cut(s) 17
NarI GGCGCC 1 cut(s) 29
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 2 cut(s) 30, 82
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 91, 200
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 64, 246
PluTI GGCGCC 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 30, 82
PspPI GGNCC 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 16
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 152, 170
SatI GCNGC 2 cut(s) 63, 245
Sau96I GGNCC 1 cut(s) 81
SetI ASST 5 cut(s) 38, 129, 249, 273, 297
SfoI GGCGCC 1 cut(s) 30
Sse9I AATT 2 cut(s) 149, 281
SsiI CCGC 3 cut(s) 15, 63, 289
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 2 cut(s) 74, 248
TaaI ACNGT 2 cut(s) 25, 277
TaqI TCGA 2 cut(s) 11, 20
TasI AATT 2 cut(s) 149, 281
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 91, 200
Tru1I TTAA 2 cut(s) 152, 170
Tru9I TTAA 2 cut(s) 152, 170
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 98, 162, 230
TspRI CASTG 1 cut(s) 210
Tth111I GACNNNGTC 1 cut(s) 16
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 74, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.