Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001155.1

Orthogroup ID

OG0000693

Physical Location & Seq

Genomic Coordinates Forward (+)

2483 .. 5096

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001155.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgcgacatggccgcacgggccatctattatcagcctttctccgactccgagtagccggtgacgccgtgacaacggtgacattgctgatttgctgccttgctggtaagtcgaacttttgggtttatcgaatttctcacaatctcacaaactctttctgggttttcactttccagtcaaaggcgccgactcttcactcttggtttgctcgctttgactcctcttcaagctgtcaagcaacaaagcagaagactttggttcaatttctgggttcttccttcaagctcagtgagtctctgaatctcttgttaagttgctgggctttgattcacctggaggaagaagctggtgacatacctgtcttcttgacaggtaaagacgaaattgaattcgtagaaagacttattgaagaaaaacttaaacagttaccggagaatagtcaaaaactagtagcggtacctttattttcatctcttccgttagaacagcaaatgcgagcttttgcaccagcctgtcctgggtttcttaaggaattaaagcagtatcccactttggaagttgggaatgcaagatttgaatcgctggataggatgaaagaagagagcaaggaagcaactatgcagctagttgatatggagtgtggttacctcaccgttgaatttttccgcaagcttcctcaggatattgaaaaggggggacatatgtatcagctgcatagttggttacgtattgaaaagggggcacatatgtatcagctgcatagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

254

Amino Acids

29.08

Weight (kDa)

7.11

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37570 FvH4_6g37570 FvH4_6g37570
pyrus_communis	pycom13g05420
rosa_chinensis	RchiOBHm_Chr1g0325471 RchiOBHm_Chr1g0343781 RchiOBHm_Chr7g0185751 RchiOBHm_Chr7g0214791 RchiOBHm_Chr7g0230311
rosa_laevigata	RLG00000007418 RLG00000007555 RLG00000018106 RLG00000023913 RLG00000029245 RLG00000032850
rosa_multiflora	Rmu_co8435441.1_g000001 Rmu_sc0001155.1_g000002 Rmu_sc0001353.1_g000025 Rmu_sc0004705.1_g000009 Rmu_sc0009346.1_g000015 Rmu_sc0011261.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145640 Rroxscaffold_2G00147240 Rroxscaffold_3G00242790 Rroxscaffold_4G00299880 Rroxscaffold_4G00311280 Rroxscaffold_4G00332500 Rroxscaffold_5G00337690 Rroxscaffold_7G00186730
rosa_rugosa	Rorug01G0451200 Rorug02G0257400 Rorug02G0421400 Rorug03G0174700 Rorug04G0086300 Rorug04G0136900 Rorug05G0023500.1 Rorug07G0311000
rosa_samantha	Rh1AG018200 Rh1AG067800 Rh1AG067900 Rh1AG068100 Rh1AG261900 Rh1AG262100 Rh1AG262200 Rh1CG245000 Rh1DG111500 Rh2CG341900 Rh2DG115800 Rh2DG326300 Rh3AG192100 Rh3BG221800 Rh3CG216500 Rh4AG214300 Rh4AG281900 Rh4BG253100 Rh4CG085200 Rh4CG296700 Rh4DG023600 Rh4DG278700 Rh5AG168900 Rh5AG516600 Rh5BG047000 Rh6AG088200 Rh6BG037000 Rh6BG052300 Rh6BG226400 Rh7AG172300 Rh7AG372800 Rh7AG482700 Rh7BG144100 Rh7CG391000 Rh7DG407300
rosa_wichuraiana	Rw1G023140 Rw2G018220 Rw6G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	2 cut(s)	181, 454
AciI	CCGC	3 cut(s)	13, 452, 664
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	3 cut(s)	129, 386, 656
AcyI	GRCGYC	2 cut(s)	63, 182
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	178, 516
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	9 cut(s)	225, 260, 280, 386, 407, 575, 656, 686, 731
AhlI	ACTAGT	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	330, 514
AluBI	AGCT	8 cut(s)	228, 283, 344, 497, 622, 670, 709, 754
AluI	AGCT	8 cut(s)	228, 283, 344, 497, 622, 670, 709, 754
Alw26I	GTCTC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	10, 19
ApeKI	GCWGC	4 cut(s)	93, 619, 709, 754
ApoI	RAATTY	3 cut(s)	129, 386, 656
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	5 cut(s)	71, 88, 320, 359, 640
AxyI	CCTNAGG	1 cut(s)	675
BaeGI	GKGCMC	1 cut(s)	742
BaeI	ACNNNNGTAYC	4 cut(s)	686, 719, 731, 764
BanI	GGYRCC	2 cut(s)	181, 454
BbsI	GAAGAC	2 cut(s)	254, 352
BbvI	GCAGC	4 cut(s)	80, 631, 696, 741
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	332, 516
BciVI	GTATCC	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	297
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	2 cut(s)	446, 623
BfoI	RGCGCY	1 cut(s)	185
BfrI	CTTAAG	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	552
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	5 cut(s)	13, 94, 620, 710, 755
BlsI	GCNGC	5 cut(s)	14, 95, 621, 711, 756
Bme1390I	CCNGG	2 cut(s)	332, 516
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	183, 456
BmrFI	CCNGG	2 cut(s)	332, 516
BpiI	GAAGAC	2 cut(s)	254, 352
BpmI	CTGGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	574
BsaHI	GRCGYC	2 cut(s)	63, 182
BsaJI	CCNNGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 516
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	1 cut(s)	80
Bse8I	GATNNNNATC	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	332, 516
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	178, 516
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	298, 689
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	4 cut(s)	80, 631, 696, 741
BseYI	CCCAGC	1 cut(s)	315
BshFI	GGCC	2 cut(s)	12, 21
BshNI	GGYRCC	2 cut(s)	181, 454
BsiSI	CCGG	2 cut(s)	57, 428
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	2 cut(s)	178, 516
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	2 cut(s)	12, 21
Bsp1286I	GDGCHC	1 cut(s)	742
BspACI	CCGC	3 cut(s)	13, 452, 664
BspANI	GGCC	2 cut(s)	12, 21
BspCNI	CTCAG	2 cut(s)	297, 688
BspLI	GGNNCC	2 cut(s)	183, 456
BspT107I	GGYRCC	2 cut(s)	181, 454
BspTI	CTTAAG	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	515
BssNI	GRCGYC	2 cut(s)	63, 182
Bst2UI	CCWGG	2 cut(s)	332, 516
Bst4CI	ACNGT	3 cut(s)	76, 423, 652
Bst6I	CTCTTC	4 cut(s)	195, 226, 477, 591
BstACI	GRCGYC	2 cut(s)	63, 182
BstAFI	CTTAAG	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	725
BstC8I	GCNNGC	3 cut(s)	208, 495, 668
BstDEI	CTNAG	2 cut(s)	284, 675
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	594
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 62
BstNI	CCWGG	2 cut(s)	332, 516
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	330, 514
BstSLI	GKGCMC	1 cut(s)	742
BstSNI	TACGTA	1 cut(s)	725
BstV1I	GCAGC	4 cut(s)	80, 631, 696, 741
BstV2I	GAAGAC	2 cut(s)	254, 352
Bsu36I	CCTNAGG	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	12, 21
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	208, 495, 668
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	1 cut(s)	8
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	284, 675
DinI	GGCGCC	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	4 cut(s)	195, 226, 477, 591
EarI	CTCTTC	4 cut(s)	195, 226, 477, 591
Eco105I	TACGTA	1 cut(s)	725
Eco81I	CCTNAGG	1 cut(s)	675
Eco91I	GGTNACC	1 cut(s)	641
EcoO65I	GGTNACC	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	330, 514
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
FaeI	CATG	1 cut(s)	11
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 399, 431
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	1 cut(s)	7
FauNDI	CATATG	2 cut(s)	699, 744
Fnu4HI	GCNGC	5 cut(s)	13, 94, 620, 710, 755
FokI	GGATG	1 cut(s)	601
Fsp4HI	GCNGC	5 cut(s)	13, 94, 620, 710, 755
FspBI	CTAG	2 cut(s)	446, 623
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	5 cut(s)	13, 94, 620, 710, 755
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	353
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	12, 21
HapII	CCGG	2 cut(s)	57, 428
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	2 cut(s)	63, 182
Hin1II	CATG	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	7 cut(s)	45, 187, 215, 290, 298, 325, 575
HpaII	CCGG	2 cut(s)	57, 428
HphI	GGTGA	5 cut(s)	71, 88, 320, 359, 640
Hpy188I	TCNGA	3 cut(s)	44, 50, 297
Hpy188III	TCNNGA	2 cut(s)	364, 677
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	76, 423, 652
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	5 cut(s)	503, 566, 619, 712, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 62
HpyF3I	CTNAG	2 cut(s)	284, 675
HpySE526I	ACGT	1 cut(s)	724
Hsp92I	GRCGYC	2 cut(s)	63, 182
Hsp92II	CATG	1 cut(s)	11
HspAI	GCGC	1 cut(s)	182
KasI	GGCGCC	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	458
Lsp1109I	GCAGC	4 cut(s)	80, 631, 696, 741
MaeI	CTAG	2 cut(s)	446, 623
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	7 cut(s)	59, 67, 76, 347, 423, 641, 720
MboII	GAAGA	9 cut(s)	182, 213, 259, 264, 350, 352, 419, 464, 608
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	6 cut(s)	129, 260, 381, 386, 530, 656
Mly113I	GGCGCC	1 cut(s)	182
MlyI	GAGTC	4 cut(s)	39, 181, 209, 299
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	229, 328, 656, 684
MseI	TTAA	4 cut(s)	308, 417, 525, 533
MspA1I	CMGCKG	2 cut(s)	709, 754
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	2 cut(s)	57, 428
MspR9I	CCNGG	2 cut(s)	332, 516
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	332, 516
MwoI	GCNNNNNNNGC	2 cut(s)	18, 62
NarI	GGCGCC	1 cut(s)	182
NdeI	CATATG	2 cut(s)	699, 744
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	183, 456
NmuCI	GTSAC	4 cut(s)	59, 67, 76, 347
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	3 cut(s)	298, 325, 575
PkrI	GCNGC	5 cut(s)	14, 95, 621, 711, 756
PleI	GAGTC	4 cut(s)	39, 181, 209, 298
PluTI	GGCGCC	1 cut(s)	185
PpsI	GAGTC	4 cut(s)	39, 181, 209, 298
Ppu21I	YACGTR	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	330, 514
PspEI	GGTNACC	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	2 cut(s)	330, 514
PspN4I	GGNNCC	2 cut(s)	183, 456
PspPI	GGNCC	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	709, 754
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	4 cut(s)	308, 417, 525, 533
SatI	GCNGC	5 cut(s)	13, 94, 620, 710, 755
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	4 cut(s)	39, 181, 209, 299
ScrFI	CCNGG	2 cut(s)	332, 516
SduI	GDGCHC	1 cut(s)	742
SfiI	GGCCNNNNNGGCC	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SnaBI	TACGTA	1 cut(s)	725
SpeI	ACTAGT	1 cut(s)	445
Sse9I	AATT	6 cut(s)	129, 260, 381, 386, 530, 656
SsiI	CCGC	3 cut(s)	13, 452, 664
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	446, 623
StyD4I	CCNGG	2 cut(s)	330, 514
TaaI	ACNGT	3 cut(s)	76, 423, 652
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	2 cut(s)	110, 127
TasI	AATT	6 cut(s)	129, 260, 381, 386, 530, 656
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	3 cut(s)	298, 325, 575
Tru1I	TTAA	4 cut(s)	308, 417, 525, 533
Tru9I	TTAA	4 cut(s)	308, 417, 525, 533
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	4 cut(s)	59, 67, 76, 347
TseI	GCWGC	4 cut(s)	93, 619, 709, 754
Tsp45I	GTSAC	4 cut(s)	59, 67, 76, 347
TspDTI	ATGAA	2 cut(s)	456, 605
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	524
XapI	RAATTY	3 cut(s)	129, 386, 656
XspI	CTAG	2 cut(s)	446, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.