Rorug02G0421400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000693
Physical Location & Seq
Reverse (-)
54149611 .. 54150129
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0421400.1

Sequence Viewer

Length: 405 bp
ATGGCCTCCATTGATGCTATCACCGCTAGCTGTGCTGCCTCCCTTGCGCTTGCAGAGGGAGGTAGTGCTCCTGATCTGGGGAGAATTGGTGGCGGCCCTGTTCGTCGGTCTTCCAAATCTTTTCTGATTGGGAAGCCTCTGACCTGCCGACCGGTTAACCCTACGGCCTTCAAGGCTCACCTCCTTTGTACCTGGATGGATGTCACTCTGGTGATGTTGAAGAAGAAGTCGGGCAAGCTACTTGGGAGTAGGAACAAGAATCATCGCCCTAGCAAGAAGCCGAATGTTGCTGCTTTACGACTCTCTTACCCTGCAGTTACTGGTATTGATCCTAGCCCCCTAGCGACAAGGGCAAGGGAAAGTTTTAGGCTTTTCCAGGTTTCCTTGCCTAATACTAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.24

Weight (kDa)

11.01

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 2 cut(s) 24, 93
AclWI GGATC 1 cut(s) 323
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 172, 220
AjnI CCWGG 2 cut(s) 191, 375
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 2 cut(s) 30, 238
AluI AGCT 2 cut(s) 30, 238
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 3 cut(s) 3, 94, 165
ApeKI GCWGC 2 cut(s) 35, 290
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 13, 170, 223
AsuNHI GCTAGC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 22, 277
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 2 cut(s) 193, 377
BfaI CTAG 5 cut(s) 27, 270, 333, 341, 396
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 3 cut(s) 36, 94, 291
BlsI GCNGC 3 cut(s) 37, 95, 292
Bme1390I CCNGG 2 cut(s) 193, 377
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 193, 377
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 2 cut(s) 193, 377
BseGI GGATG 2 cut(s) 201, 205
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 22, 277
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 5, 96, 167
BshTI ACCGGT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 3 cut(s) 5, 96, 167
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 73, 328
BspACI CCGC 2 cut(s) 24, 93
BspANI GGCC 3 cut(s) 5, 96, 167
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 2 cut(s) 73, 328
Bst2UI CCWGG 2 cut(s) 193, 377
BstC8I GCNNGC 3 cut(s) 28, 51, 236
BstF5I GGATG 2 cut(s) 201, 205
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 76, 331
BstMBI GATC 2 cut(s) 73, 328
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 350
BstNI CCWGG 2 cut(s) 193, 377
BstSCI CCNGG 2 cut(s) 191, 375
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 22, 277
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 5, 96, 167
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 2 cut(s) 201, 205
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 3 cut(s) 28, 51, 236
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 151
CviQI GTAC 1 cut(s) 189
DpnI GATC 2 cut(s) 75, 330
DpnII GATC 2 cut(s) 73, 328
EcoRII CCWGG 2 cut(s) 191, 375
Fnu4HI GCNGC 3 cut(s) 36, 94, 291
FokI GGATG 2 cut(s) 208, 212
Fsp4HI GCNGC 3 cut(s) 36, 94, 291
FspBI CTAG 5 cut(s) 27, 270, 333, 341, 396
GlaI GCGC 1 cut(s) 48
GluI GCNGC 3 cut(s) 36, 94, 291
HaeIII GGCC 3 cut(s) 5, 96, 167
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 259, 300
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 13, 170, 223
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 126, 141
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 53, 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 350
HspAI GCGC 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 73, 328
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 2 cut(s) 22, 277
LweI GCATC 1 cut(s) 4
MaeI CTAG 5 cut(s) 27, 270, 333, 341, 396
MaeIII GTNAC 2 cut(s) 202, 316
MalI GATC 2 cut(s) 75, 330
MboI GATC 2 cut(s) 73, 328
MboII GAAGA 3 cut(s) 102, 232, 235
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 6 cut(s) 16, 49, 49, 53, 147, 191
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 193, 377
MvaI CCWGG 2 cut(s) 193, 377
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 173, 350
NdeII GATC 2 cut(s) 73, 328
NheI GCTAGC 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 209
PfeI GAWTC 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 3 cut(s) 37, 95, 292
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 191, 375
PspGI CCWGG 2 cut(s) 191, 375
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 36, 94, 291
Sau3AI GATC 2 cut(s) 73, 328
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 193, 377
SduI GDGCHC 1 cut(s) 70
SetI ASST 7 cut(s) 32, 64, 146, 183, 194, 240, 381
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 1 cut(s) 84
SsiI CCGC 2 cut(s) 24, 93
SspMI CTAG 5 cut(s) 27, 270, 333, 341, 396
StyD4I CCNGG 2 cut(s) 191, 375
TaqII GACCGA 1 cut(s) 96
TasI AATT 1 cut(s) 84
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 35, 290
Tsp45I GTSAC 1 cut(s) 202
XspI CTAG 5 cut(s) 27, 270, 333, 341, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.