Rh1AG262200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000693
Physical Location & Seq
Reverse (-)
48511912 .. 48512229
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG262200.1

Sequence Viewer

Length: 231 bp
ATGGAGAACTACAAGGATAAGGTGAAGACACTAACGAAGGAGGAATATATACCGGTTGATGGAAGGTCCTCAGCTTTGGTGGAGTTTCTCCGGCAAGATATTGTCAATGGAAATTTGGACAGAGTGAAAGAATGTGTGGCCATAGCCGAGAACATTGGCGGAGAAGACGGCAAGTTTCACTCATCAATGCTATTGGCCGGGAAGAAAAGACACCTCTTTTCACTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.57

Weight (kDa)

6.72

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AcoI YGGCCR 2 cut(s) 138, 195
AcsI RAATTY 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 59
AgeI ACCGGT 1 cut(s) 52
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AoxI GGCC 2 cut(s) 138, 195
ApoI RAATTY 1 cut(s) 112
AsiGI ACCGGT 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 140
BbsI GAAGAC 2 cut(s) 32, 171
BbvCI CCTCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 199
BfaI CTAG 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 32, 171
Bpu10I CCTNAGC 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 84
BshFI GGCC 2 cut(s) 140, 197
BshTI ACCGGT 1 cut(s) 52
BsiSI CCGG 3 cut(s) 53, 91, 198
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 2 cut(s) 140, 197
BspACI CCGC 1 cut(s) 159
BspANI GGCC 2 cut(s) 140, 197
BspCNI CTCAG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 197
BstV2I GAAGAC 2 cut(s) 32, 171
BsuRI GGCC 2 cut(s) 140, 197
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 66
CspAI ACCGGT 1 cut(s) 52
CviJI RGCY 4 cut(s) 74, 140, 146, 197
CviKI_1 RGCY 4 cut(s) 74, 140, 146, 197
DdeI CTNAG 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 138, 195
EciI GGCGGA 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 66
FaiI YATR 3 cut(s) 48, 50, 143
FspBI CTAG 1 cut(s) 229
HaeIII GGCC 2 cut(s) 140, 197
HapII CCGG 3 cut(s) 53, 91, 198
HpaII CCGG 3 cut(s) 53, 91, 198
HphI GGTGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 31, 57
HpyF3I CTNAG 1 cut(s) 70
LpnPI CCDG 3 cut(s) 66, 104, 211
MaeI CTAG 1 cut(s) 229
MboII GAAGA 3 cut(s) 37, 176, 214
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 112
MluNI TGGCCA 1 cut(s) 140
MnlI CCTC 3 cut(s) 34, 79, 224
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 3 cut(s) 53, 91, 198
MspR9I CCNGG 1 cut(s) 199
NciI CCSGG 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 172
PinAI ACCGGT 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 66
PspPI GGNCC 1 cut(s) 66
PspPPI RGGWCCY 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 199
SetI ASST 4 cut(s) 24, 68, 76, 216
SgeI CNNG 8 cut(s) 25, 65, 103, 107, 160, 184, 210, 211
SinI GGWCC 1 cut(s) 66
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 197
TasI AATT 1 cut(s) 112
TscAI CASTG 1 cut(s) 228
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 112
XspI CTAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.