Rh4CG296700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000693
Physical Location & Seq
Reverse (-)
55590164 .. 55590451
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG296700.1

Sequence Viewer

Length: 288 bp
ATGACACAGGCGGCGTCAGGGAACAGCGACGGTGCTGTGAACGAGAAAGAAGAAGACCTGATCTTCTCCTTCAACTACGACAAGGGCGTTGTGAACGAGAAAGAAGAAGACCCGATCCAGGAACTCACTCTCGTCTGTCGTTGCCCTACACGGCTTCATCTCCTCCATCAGACCCTCTATCGCCGCCCCGCCCTGTGGTGCCCCATGGCCGTCTCGACTGCGTTGACTCAGGCGCCGACCTCTGTGGCCTTCTTCCTTATCGATTCTGCCTTCTTCCTAGTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.64

Weight (kDa)

4.77

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 198, 232
AciI CCGC 3 cut(s) 11, 184, 189
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 14, 233
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 118, 195
AgsI TTSAA 1 cut(s) 73
AjnI CCWGG 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 109
AoxI GGCC 2 cut(s) 207, 246
AspLEI GCGC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 203
BanI GGYRCC 2 cut(s) 198, 232
BbsI GAAGAC 2 cut(s) 60, 114
BccI CCATC 1 cut(s) 174
BceAI ACGGC 2 cut(s) 167, 194
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 2 cut(s) 12, 184
BlsI GCNGC 2 cut(s) 13, 185
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 200, 234
BmrFI CCNGG 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 60, 114
Bsa29I ATCGAT 1 cut(s) 261
BsaHI GRCGYC 2 cut(s) 14, 233
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 195
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 118, 195
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 203
BshFI GGCC 2 cut(s) 209, 248
BshNI GGYRCC 2 cut(s) 198, 232
BshVI ATCGAT 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 118, 195
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsnI GGCC 2 cut(s) 209, 248
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 60, 114
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 3 cut(s) 11, 184, 189
BspANI GGCC 2 cut(s) 209, 248
BspCNI CTCAG 1 cut(s) 241
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 200, 234
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 2 cut(s) 198, 232
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 60, 114
BssNI GRCGYC 2 cut(s) 14, 233
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 14, 233
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 63, 117
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 60, 114
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 203
BstV2I GAAGAC 2 cut(s) 60, 114
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 2 cut(s) 209, 248
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 204
CfoI GCGC 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 154, 209, 248
CviKI_1 RGCY 3 cut(s) 154, 209, 248
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 228
DinI GGCGCC 1 cut(s) 234
DpnI GATC 2 cut(s) 62, 116
DpnII GATC 2 cut(s) 60, 114
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 234
EheI GGCGCC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 12, 184
Fsp4HI GCNGC 2 cut(s) 12, 184
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 234
GluI GCNGC 2 cut(s) 12, 184
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 2 cut(s) 209, 248
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 2 cut(s) 14, 233
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 2 cut(s) 226, 263
Hpy166II GTNNAC 3 cut(s) 40, 94, 225
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 3 cut(s) 40, 94, 225
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 79, 259, 280
HpyCH4III ACNGT 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 14, 233
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 233
KasI GGCGCC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 60, 114
LpnPI CCDG 6 cut(s) 3, 71, 104, 131, 206, 215
MaeI CTAG 1 cut(s) 278
MalI GATC 2 cut(s) 62, 116
MboI GATC 2 cut(s) 60, 114
MboII GAAGA 7 cut(s) 55, 62, 65, 116, 119, 244, 265
MhlI GDGCHC 1 cut(s) 203
Mly113I GGCGCC 1 cut(s) 233
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 3 cut(s) 173, 185, 250
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NarI GGCGCC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 204
NdeII GATC 2 cut(s) 60, 114
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 200, 234
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 2 cut(s) 13, 185
PleI GAGTC 1 cut(s) 220
PluTI GGCGCC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 200, 234
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SatI GCNGC 2 cut(s) 12, 184
Sau3AI GATC 2 cut(s) 60, 114
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 203
SetI ASST 2 cut(s) 60, 242
SfoI GGCGCC 1 cut(s) 234
SsiI CCGC 3 cut(s) 11, 184, 189
SspDI GGCGCC 1 cut(s) 232
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 215, 261
TatI WGTACW 1 cut(s) 280
TauI GCSGC 2 cut(s) 14, 186
TfiI GAWTC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 146
XspI CTAG 1 cut(s) 278
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.