pycom11g18140

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000343
Physical Location & Seq
Forward (+)
20376927 .. 20377661
735 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGGAATCGTCGGATGATGAGGCAGAGGCGGTGCCACAATCCGTTTCAAATTACCATTTTGTAGATGACAGCGATGAGCCCATCTCATTTCACGTTTTGCCAATTCAGTGGAGTGAGTGTGAGAGGCAAGACGGCAAGAAAATGCAGATATTTGTGCGTGGCACTAACGATAATGGGCTTCAGAAACTGTATAAGCATGTTATCGCGTGGCGGTTTGATCGATCCAATGTCGATCCTGAGATATCGGTGCTCTCTAAGGAAAATAACTGGCTCAAGCTTCAGAAGCCGAGGAAGAGCTTCGAGGAAGTAATAAGGTCAATCTTGATAACACTGCAGTTCCTTCACTATGTGAGCAGAAATCCTGAGACATCTGCAAAATCTTTGTGGGATCACTTATCTAAAGTTTTCAGCTTGTACAAGGTCAGGCCTTCTCAGAATGACCTGGTGAATCACATTCCTCTAATTAGTGAAGCTGTTAAAAGGGATGATGCGTTAGCAAAGTGCAAGAGTTCTCTTTTCTACTCTTTTGCCTTCTGTGCAGTGCAAATGAACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

186

Amino Acids

21.45

Weight (kDa)

6.3

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNMT1-RFD PF12047 14 - 136 5.6e-13 Cytosine specific DNA methyltransferase replication foci domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48090 AT5G48090 AT5G48090 AT5G55390 AT5G55390 AT5G55390
fragaria_vesca FvH4_3g23690 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_4g08730 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160 FvH4_5g31160
malus_domestica MD03G1191000.v1.1 MD11G1207800.v1.1 MD11G1208000.v1.1
prunus_persica Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227500_v2.0.a1 Prupe.4G227600_v2.0.a1 Prupe.4G227700_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1 Prupe.4G227800_v2.0.a1
pyrus_communis pycom01g03400 pycom03g14420 pycom11g18100 pycom11g18140 pycom11g18150 pycom11g18160
rosa_chinensis RchiOBHm_Chr2g0145981 RchiOBHm_Chr4g0405241 RchiOBHm_Chr4g0405271 RchiOBHm_Chr5g0016201 RchiOBHm_Chr5g0041831 RchiOBHm_Chr5g0041871 RchiOBHm_Chr5g0041881 RchiOBHm_Chr5g0059241
rosa_laevigata RLG00000002117 RLG00000008861 RLG00000008862 RLG00000011000 RLG00000033216 RLG00000034097 RLG00000034101
rosa_multiflora Rmu_sc0000161.1_g000001 Rmu_sc0000861.1_g000040 Rmu_sc0007522.1_g000003 Rmu_sc0009443.1_g000015 Rmu_sc0022129.1_g000001 Rmu_sc0042315.1_g000001
rosa_roxburghii Rroxscaffold_1G00038660 Rroxscaffold_1G00038690 Rroxscaffold_5G00349560 Rroxscaffold_5G00349610 Rroxscaffold_6G00388370 Rroxscaffold_7G00188740
rosa_rugosa Rorug03G0199700 Rorug04G0055400 Rorug04G0055500 Rorug04G0055900 Rorug04G0056000 Rorug04G0056100 Rorug04G0056100 Rorug04G0056200 Rorug05G0195600 Rorug05G0195700 Rorug05G0195800 Rorug05G0195900 Rorug05G0196800 Rorug05G0385000
rosa_samantha Rh4AG129900 Rh4AG130100 Rh4BG124200 Rh4BG124400 Rh4BG124500 Rh4CG137200 Rh4CG137300 Rh4DG123500 Rh4DG123700 Rh5AG280800 Rh5AG281400 Rh5BG286700 Rh5BG287000 Rh5BG397800 Rh5CG318100 Rh5CG318600 Rh5CG421600 Rh5DG132300 Rh5DG132400 Rh5DG295400 Rh5DG295700 Rh7BG475300
rosa_wichuraiana Rw0G001330 Rw0G005730 Rw4G008670 Rw4G010510 Rw4G010540 Rw5G026450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AccII CGCG 1 cut(s) 206
AciI CCGC 2 cut(s) 29, 211
AclI AACGTT 1 cut(s) 552
AclWI GGATC 3 cut(s) 216, 227, 396
AcuI CTGAAG 2 cut(s) 164, 263
AdeI CACNNNGTG 1 cut(s) 349
AfaI GTAC 1 cut(s) 416
AgsI TTSAA 1 cut(s) 48
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 4 cut(s) 277, 297, 411, 473
AluI AGCT 4 cut(s) 277, 297, 411, 473
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 3 cut(s) 216, 227, 396
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 457
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 1 cut(s) 478
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bse1I ACTGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 443
BseCI ATCGAT 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 19, 490
BseMII CTCAG 3 cut(s) 228, 354, 446
BseNI ACTGG 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 427
BshNI GGYRCC 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 81, 252
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 4 cut(s) 217, 221, 232, 388
BspACI CCGC 2 cut(s) 29, 211
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 3 cut(s) 229, 355, 445
BspDI ATCGAT 1 cut(s) 220
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 336
BspPI GGATC 3 cut(s) 216, 227, 396
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 4 cut(s) 217, 221, 232, 388
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 414
BstDEI CTNAG 4 cut(s) 237, 255, 363, 432
BstF5I GGATG 2 cut(s) 19, 490
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 4 cut(s) 220, 224, 235, 391
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 4 cut(s) 217, 221, 232, 388
BstMWI GCNNNNNNNGC 2 cut(s) 283, 536
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 332
BstUI CGCG 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 220
BsuRI GGCC 1 cut(s) 427
BsuTUI ATCGAT 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 19, 490
BtsI GCAGTG 2 cut(s) 329, 546
BtsIMutI CAGTG 3 cut(s) 113, 329, 546
CaiI CAGNNNCTG 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 441
Csp6I GTAC 1 cut(s) 415
CviAII CATG 1 cut(s) 197
CviJI RGCY 9 cut(s) 79, 178, 271, 277, 286, 297, 411, 427, 473
CviKI_1 RGCY 9 cut(s) 79, 178, 271, 277, 286, 297, 411, 427, 473
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 4 cut(s) 237, 255, 363, 432
DpnI GATC 4 cut(s) 219, 223, 234, 390
DpnII GATC 4 cut(s) 217, 221, 232, 388
DraIII CACNNNGTG 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 164, 263
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 192, 198, 348
FatI CATG 1 cut(s) 196
FokI GGATG 2 cut(s) 26, 497
FriOI GRGCYC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 427
Hin1II CATG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 5, 448
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 4 cut(s) 13, 183, 282, 435
Hpy188III TCNNGA 3 cut(s) 236, 322, 362
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 350, 438, 541
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 93, 552
HpyCH4V TGCA 6 cut(s) 145, 334, 374, 504, 539, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 536
HpyF3I CTNAG 4 cut(s) 237, 255, 363, 432
HpySE526I ACGT 2 cut(s) 93, 552
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 4 cut(s) 217, 221, 232, 388
LguI GCTCTTC 1 cut(s) 287
LpnPI CCDG 6 cut(s) 249, 253, 375, 409, 428, 455
LweI GCATC 1 cut(s) 478
MabI ACCWGGT 1 cut(s) 441
MaeII ACGT 2 cut(s) 93, 552
MalI GATC 4 cut(s) 219, 223, 234, 390
MboI GATC 4 cut(s) 217, 221, 232, 388
MboII GAAGA 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 81, 252
MluCI AATT 3 cut(s) 49, 102, 462
MnlI CCTC 6 cut(s) 13, 19, 117, 282, 295, 468
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 1 cut(s) 477
MspR9I CCNGG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 283, 536
NdeII GATC 4 cut(s) 217, 221, 232, 388
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 312
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 5, 448
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 187
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 477
Sau3AI GATC 4 cut(s) 217, 221, 232, 388
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 2 cut(s) 81, 252
SetI ASST 9 cut(s) 96, 279, 299, 317, 413, 423, 444, 475, 555
SexAI ACCWGGT 1 cut(s) 441
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 3 cut(s) 49, 102, 462
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 2 cut(s) 29, 211
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 2 cut(s) 96, 555
TaqI TCGA 3 cut(s) 220, 231, 300
TasI AATT 3 cut(s) 49, 102, 462
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 2 cut(s) 5, 448
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 3 cut(s) 113, 336, 546
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 3 cut(s) 113, 336, 546
XceI RCATGY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.