pycom17g24550

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000351
Physical Location & Seq
Forward (+)
22824030 .. 22825994
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGACGAAAAGTTCGATGATCGATCTGAGTAGCGATCAGTTTGTAGAAATGATGGTGGTCGATGGTTGCTTTCTCTTAGAACTTACCCGCGGAATGAATCCGATTTCTAGATATCATGACGTTTTCAGTATGCCAGAGGTGTATTCGATAGTTAAAAATGACTTGTTGCTGCTTGAAAACCAGCTTCCATGGAAAGTTCTCGACTGTTTATTCAACCTGCAAAAGAATCAGAAGATACTTCTCTACATCCGCGAACTTCGCTATTATGTTTCGAAATTATGCATAGCCCGTGGCAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

101

Amino Acids

11.67

Weight (kDa)

6.54

Isoelectric Point (pI)

22.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 7 - 77 1.2e-20 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000351)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16420 FvH4_6g39730
malus_domestica MD02G1081100.v1.1 MD02G1081200.v1.1 MD09G1249600.v1.1 MD09G1250500.v1.1 MD09G1250900.v1.1 MD15G1081900.v1.1 MD15G1208800.v1.1 MD17G1242700.v1.1 MD17G1242800.v1.1 MD17G1242900.v1.1 MD17G1243200.v1.1
prunus_persica Prupe.3G130000_v2.0.a1 Prupe.3G130100_v2.0.a1 Prupe.3G130300_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130400_v2.0.a1 Prupe.3G130500_v2.0.a1 Prupe.3G136500_v2.0.a1 Prupe.3G141700_v2.0.a1 Prupe.3G141800_v2.0.a1 Prupe.3G141900_v2.0.a1 Prupe.3G155700_v2.0.a1 Prupe.7G207700_v2.0.a1 Prupe.7G207800_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G207900_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1 Prupe.7G208100_v2.0.a1
pyrus_communis pycom09g16640 pycom09g16690 pycom15g07650 pycom17g24550 pycom17g24560 pycom17g24570 pycom17g24670
rosa_chinensis RchiOBHm_Chr2g0153821 RchiOBHm_Chr2g0163501 RchiOBHm_Chr2g0163511 RchiOBHm_Chr2g0163521 RchiOBHm_Chr5g0063201 RchiOBHm_Chr7g0229231 RchiOBHm_Chr7g0229251
rosa_laevigata RLG00000001520 RLG00000020727 RLG00000020731 RLG00000021394 RLG00000022074 RLG00000023249
rosa_multiflora Rmu_sc0000235.1_g000044 Rmu_sc0000693.1_g000020 Rmu_sc0000693.1_g000032 Rmu_sc0002053.1_g000010 Rmu_sc0002053.1_g000011 Rmu_sc0003887.1_g000020 Rmu_sc0004278.1_g000001 Rmu_sc0012759.1_g000001
rosa_roxburghii Rroxscaffold_2G00087170 Rroxscaffold_2G00087180 Rroxscaffold_2G00087190 Rroxscaffold_2G00087230 Rroxscaffold_2G00087250 Rroxscaffold_2G00087320 Rroxscaffold_2G00094720 Rroxscaffold_3G00230450 Rroxscaffold_3G00230460
rosa_rugosa Rorug02G0442300.1 Rorug02G0442400 Rorug02G0503400 Rorug02G0503500 Rorug02G0560600 Rorug05G0355000 Rorug05G0355100 Rorug07G0258000
rosa_samantha Rh2AG185500 Rh2AG506100 Rh2AG506200 Rh2AG570300 Rh2AG570400 Rh2BG515600 Rh2BG582500 Rh2BG582600 Rh2BG582700 Rh2CG491600 Rh2CG491700 Rh2CG552300 Rh2CG552400 Rh2CG617700 Rh2CG617800 Rh2DG528100 Rh2DG592200 Rh2DG592300 Rh2DG592400 Rh2DG665500 Rh5CG234300 Rh5DG460600 Rh7AG407800 Rh7BG387600 Rh7CG426800 Rh7CG427000 Rh7DG402900
rosa_wichuraiana Rw0G001890 Rw2G041540 Rw2G047220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 225
AccII CGCG 2 cut(s) 90, 252
AciI CCGC 3 cut(s) 88, 90, 250
AgsI TTSAA 2 cut(s) 176, 214
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 169
ArsI GACNNNNNNTTYG 1 cut(s) 27
AsuII TTCGAA 1 cut(s) 272
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 46, 56
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 225
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 88, 188, 289
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 88, 188, 289
BseGI GGATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 90, 252
BshVI ATCGAT 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 272
Bsp143I GATC 3 cut(s) 18, 22, 34
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 3 cut(s) 88, 90, 250
BspCNI CTCAG 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 2 cut(s) 90, 252
BspHI TCATGA 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 88, 188, 289
BssMI GATC 3 cut(s) 18, 22, 34
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 26, 76
BstDSI CCRYGG 3 cut(s) 88, 188, 289
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 2 cut(s) 90, 252
BstKTI GATC 3 cut(s) 21, 25, 37
BstMBI GATC 3 cut(s) 18, 22, 34
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstUI CGCG 2 cut(s) 90, 252
BstV1I GCAGC 1 cut(s) 156
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 3 cut(s) 88, 188, 289
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 115
Cfr42I CCGCGG 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 2 cut(s) 116, 189
CviJI RGCY 2 cut(s) 184, 287
CviKI_1 RGCY 2 cut(s) 184, 287
DdeI CTNAG 2 cut(s) 26, 76
DpnI GATC 3 cut(s) 20, 24, 36
DpnII GATC 3 cut(s) 18, 22, 34
Eco130I CCWWGG 1 cut(s) 188
Eco32I GATATC 1 cut(s) 113
EcoRV GATATC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 119, 192
FaiI YATR 6 cut(s) 117, 131, 190, 267, 280, 284
FatI CATG 2 cut(s) 115, 188
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 119, 192
HinfI GANTC 2 cut(s) 97, 226
Hpy188I TCNGA 3 cut(s) 27, 102, 231
Hpy188III TCNNGA 3 cut(s) 108, 116, 200
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 220, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 2 cut(s) 26, 76
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 119, 192
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 3 cut(s) 18, 22, 34
LpnPI CCDG 3 cut(s) 147, 194, 230
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 120
MalI GATC 3 cut(s) 20, 24, 36
MboI GATC 3 cut(s) 18, 22, 34
MboII GAAGA 1 cut(s) 244
MluCI AATT 1 cut(s) 275
MnlI CCTC 1 cut(s) 130
Mph1103I ATGCAT 1 cut(s) 284
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 90
MvnI CGCG 2 cut(s) 90, 252
MwoI GCNNNNNNNGC 1 cut(s) 258
NcoI CCATGG 1 cut(s) 188
NdeII GATC 3 cut(s) 18, 22, 34
NlaIII CATG 2 cut(s) 119, 192
NsiI ATGCAT 1 cut(s) 284
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 2 cut(s) 97, 226
PkrI GCNGC 1 cut(s) 171
SacII CCGCGG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 18, 22, 34
SetI ASST 4 cut(s) 123, 141, 186, 219
Sfr303I CCGCGG 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 91
Sse9I AATT 1 cut(s) 275
SsiI CCGC 3 cut(s) 88, 90, 250
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 123
TaqI TCGA 6 cut(s) 14, 21, 60, 146, 201, 272
TasI AATT 1 cut(s) 275
TfiI GAWTC 2 cut(s) 97, 226
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 1 cut(s) 301
XbaI TCTAGA 1 cut(s) 107
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.