RchiOBHm_Chr2g0124671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000372
Physical Location & Seq
Reverse (-)
37973461 .. 37976679
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49683

Sequence Viewer

Length: 186 bp
ATGCCTTCGCCGCGATCTGCAACAAGTACGACCGATACGACATCTACAAGTAGAAAGACTCTAACGTCTCCGGTGCCGATGCATTCGCTCGCCTCTACTCCGCCATCGAGTCCGACATTGAAGCTGCTCTTCAGAAAGCGGAGCTTGCTTCAAAAGAAAAAAGTATGGCATCTGCAGGTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.76

Weight (kDa)

12.0

Isoelectric Point (pI)

94.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
AasI GACNNNNNNGTC 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 1 cut(s) 13
AciI CCGC 3 cut(s) 11, 101, 139
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 2 cut(s) 121, 152
AluBI AGCT 2 cut(s) 124, 144
AluI AGCT 2 cut(s) 124, 144
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 11, 125
BlsI GCNGC 2 cut(s) 12, 126
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 2 cut(s) 69, 178
BsaWI WCCGGW 1 cut(s) 70
BseXI GCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 3 cut(s) 11, 101, 139
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 166
BspQI GCTCTTC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 73
BssMI GATC 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 90, 146
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 14
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 10, 145
BstSFI CTRYAG 1 cut(s) 173
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 111
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 90, 146
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 2 cut(s) 124, 144
CviKI_1 RGCY 2 cut(s) 124, 144
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 72
FaiI YATR 1 cut(s) 166
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 128, 160
Fnu4HI GCNGC 2 cut(s) 11, 125
Fsp4HI GCNGC 2 cut(s) 11, 125
GluI GCNGC 2 cut(s) 11, 125
HapII CCGG 1 cut(s) 71
HinfI GANTC 2 cut(s) 58, 109
HpaII CCGG 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 114, 134, 185
HpyAV CCTTC 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 20, 82, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 145
HpySE526I ACGT 1 cut(s) 65
Kzo9I GATC 1 cut(s) 14
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 2 cut(s) 84, 161
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 2 cut(s) 69, 178
MaeII ACGT 1 cut(s) 65
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 183
MlyI GAGTC 2 cut(s) 52, 118
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 84
MspI CCGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 82
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 10, 145
NdeII GATC 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 75
NsiI ATGCAT 1 cut(s) 84
PaqCI CACCTGC 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 12, 126
PleI GAGTC 2 cut(s) 52, 117
PpsI GAGTC 2 cut(s) 52, 117
PspN4I GGNNCC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 177
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 134
SatI GCNGC 2 cut(s) 11, 125
Sau3AI GATC 1 cut(s) 14
SchI GAGTC 2 cut(s) 52, 118
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 68, 126, 146, 180
SfaNI GCATC 2 cut(s) 69, 178
SfcI CTRYAG 1 cut(s) 173
SgeI CNNG 7 cut(s) 24, 36, 60, 83, 101, 120, 157
SsiI CCGC 3 cut(s) 11, 101, 139
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 107
TaqII GACCGA 1 cut(s) 47
TauI GCSGC 1 cut(s) 13
TseI GCWGC 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.