Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Forward (+)

35669174 .. 35670188

Gene Structure 1015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCAGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTCTTAGTTACTCTCCAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

67

Amino Acids

7.88

Weight (kDa)

5.74

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjiI	CACGTC	1 cut(s)	149
AluBI	AGCT	2 cut(s)	7, 76
AluI	AGCT	2 cut(s)	7, 76
ApeKI	GCWGC	1 cut(s)	4
AsuNHI	GCTAGC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	149
BmsI	GCATC	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	59, 182
BstF5I	GGATG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	9
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	2 cut(s)	7, 76
CviKI_1	RGCY	2 cut(s)	7, 76
DdeI	CTNAG	2 cut(s)	59, 182
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	100
FaeI	CATG	1 cut(s)	68
FaiI	YATR	3 cut(s)	13, 39, 66
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	177
Hin1II	CATG	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	73, 161
Hpy188III	TCNNGA	2 cut(s)	110, 194
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	59, 182
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	68
LpnPI	CCDG	1 cut(s)	33
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	102, 156
MseI	TTAA	1 cut(s)	168
MssI	GTTTAAAC	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	68
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	6
PmeI	GTTTAAAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	5
SetI	ASST	4 cut(s)	9, 78, 151, 181
SfaNI	GCATC	1 cut(s)	43
SgeI	CNNG	9 cut(s)	20, 32, 44, 77, 85, 122, 136, 161, 170
SspMI	CTAG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	87
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.