Rh5CG269500

CMP-sialic acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000372
Physical Location & Seq
Forward (+)
28982494 .. 28985812
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG269500.1

Sequence Viewer

Length: 747 bp
ATGAGCCACGCCAAGAGAAGCGTTCCCGGGACTGTGCCGATGAAGCCGAATTTCGACGAGCGGAAACCCTCGCCGGTTGTCACCACCTCCACCGGCAAGCGCGCTCTTAATTACAATCAGGTTAGTTACCTTCAGAATGACAGAGACGATAGCTTGAAGAAGGCCTACAAAGAGTGGACTTTGACTAAGATCATTTTTATTGCTATCTGTACTTATTTGATAGTGAGCTGTTCTTCTGAGTTTCGAGGAAGGGTTGCGTCTGTGCTTTCGGGTTTACAGTCCTCTCTGTGTCAATGGGCTTCCCAGATTAAGAAGCACTCGTCATACTTGATGACTGTAGAGATGTCTATTGTTGGAAGTTTTTGCTTGTTGGTTAGCACCACTAAGTCTCTTGAAGGAGAAGCTATCAGAAAACATGGGCTTTTCTATGGATGGATTCTACTGACTTGGCTAGCATATCTGCCTGATAAAAAACGGGAATATGTGATTGATGATGATGCTCTAAGTCATGCTTCCGAGCTTTCAGTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTCTTAGTTACTCTCCAGAGATGCAGCAAAAAGTAACTAAAACATTTTCTGGAGCATGGAGAATGAGAGTAGCTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCATTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005338 GO:0005342 GO:0005463 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009555 GO:0009653 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010208 GO:0010584 GO:0010605 GO:0010927 GO:0012505 GO:0015075 GO:0015136 GO:0015165 GO:0015318 GO:0015711 GO:0015739 GO:0015780 GO:0015789 GO:0015849 GO:0015931 GO:0015932 GO:0016043 GO:0019222 GO:0022607 GO:0022857 GO:0030162 GO:0030198 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0042176 GO:0042177 GO:0043062 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045861 GO:0046942 GO:0046943 GO:0048229 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051341 GO:0051354 GO:0055085 GO:0060255 GO:0061136 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0085029 GO:0090481 GO:0098656 GO:1901264 GO:1901505 GO:1901799 GO:1902183 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1903825 GO:1903856 GO:1903857 GO:1904292 GO:1904293 GO:1905039 GO:1905897 GO:1990569 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nuc_sug_transp

Protein Analysis

248

Amino Acids

28.19

Weight (kDa)

9.48

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000372)

Species Orthologous Gene IDs
pyrus_communis pycom04g09000
rosa_chinensis RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 2 cut(s) 157, 395
AjiI CACGTC 1 cut(s) 593
AluBI AGCT 5 cut(s) 153, 228, 404, 520, 695
AluI AGCT 5 cut(s) 153, 228, 404, 520, 695
Alw26I GTCTC 2 cut(s) 138, 393
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 2 cut(s) 102, 104
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 709
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 595
BbvI GCAGC 1 cut(s) 658
BccI CCATC 2 cut(s) 426, 600
BcnI CCSGG 2 cut(s) 27, 28
BcoDI GTCTC 2 cut(s) 138, 393
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 648
Bme1390I CCNGG 2 cut(s) 27, 28
BmeT110I CYCGRG 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 593
BmrFI CCNGG 2 cut(s) 27, 28
BmsI GCATC 2 cut(s) 487, 633
BmtI GCTAGC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 595
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpmI CTGGAG 2 cut(s) 621, 693
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 1 cut(s) 26
Bse118I RCCGGY 2 cut(s) 73, 92
Bse1I ACTGG 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 437, 611
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 738
BsePI GCGCGC 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 27, 74, 93
BslFI GGGAC 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 138, 393
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 2 cut(s) 603, 737
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 102
BspOI GCTAGC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 73, 92
BsrI ACTGG 1 cut(s) 738
BssAI RCCGGY 2 cut(s) 73, 92
BssECI CCNNGG 1 cut(s) 26
BssHII GCGCGC 1 cut(s) 100
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 34, 279, 337
Bst6I CTCTTC 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 98, 102, 453
BstDEI CTNAG 5 cut(s) 186, 237, 384, 503, 626
BstF5I GGATG 2 cut(s) 437, 611
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 102, 104
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 138, 393
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 25, 26
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 709
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 164
BtrI CACGTC 1 cut(s) 593
BtsCI GGATG 2 cut(s) 437, 611
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 3 cut(s) 98, 102, 453
CfoI GCGC 2 cut(s) 102, 104
Cfr10I RCCGGY 2 cut(s) 73, 92
Cfr9I CCCGGG 1 cut(s) 26
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 210
CviAII CATG 3 cut(s) 416, 509, 678
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 5 cut(s) 186, 237, 384, 503, 626
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraI TTTAAA 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 164
Eco32I GATATC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 419, 512, 681
FaiI YATR 8 cut(s) 325, 417, 429, 457, 483, 510, 679, 726
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FaqI GGGAC 1 cut(s) 43
FatI CATG 3 cut(s) 415, 508, 677
Fnu4HI GCNGC 1 cut(s) 647
FokI GGATG 2 cut(s) 444, 618
Fsp4HI GCNGC 1 cut(s) 647
FspBI CTAG 1 cut(s) 452
GlaI GCGC 2 cut(s) 101, 103
GluI GCNGC 1 cut(s) 647
GsuI CTGGAG 2 cut(s) 621, 693
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 27, 74, 93
HgaI GACGC 1 cut(s) 246
HhaI GCGC 2 cut(s) 102, 104
Hin1II CATG 3 cut(s) 419, 512, 681
Hin6I GCGC 2 cut(s) 100, 102
HinP1I GCGC 2 cut(s) 100, 102
HinfI GANTC 1 cut(s) 436
HpaII CCGG 3 cut(s) 27, 74, 93
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 177, 275
Hpy188I TCNGA 5 cut(s) 135, 238, 410, 517, 605
Hpy188III TCNNGA 4 cut(s) 392, 554, 638, 672
Hpy8I GTNNAC 2 cut(s) 177, 275
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 140, 154, 243, 389, 524
HpyCH4III ACNGT 3 cut(s) 34, 279, 337
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 1 cut(s) 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 5 cut(s) 186, 237, 384, 503, 626
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 3 cut(s) 419, 512, 681
HspAI GCGC 2 cut(s) 100, 102
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 674
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 2 cut(s) 487, 633
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 4 cut(s) 79, 125, 629, 655
MalI GATC 1 cut(s) 191
MbiI CCGCTC 1 cut(s) 61
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 169, 225, 546, 600
MhlI GDGCHC 1 cut(s) 709
MluCI AATT 2 cut(s) 49, 109
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 79, 97, 239, 292
MseI TTAA 3 cut(s) 108, 309, 612
MspI CCGG 3 cut(s) 27, 74, 93
MspR9I CCNGG 2 cut(s) 27, 28
MssI GTTTAAAC 1 cut(s) 613
Mva1269I GAATGC 2 cut(s) 603, 737
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 27, 28
NdeII GATC 1 cut(s) 189
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 3 cut(s) 419, 512, 681
NmuCI GTSAC 1 cut(s) 79
PauI GCGCGC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 164
PctI GAATGC 2 cut(s) 603, 737
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 1 cut(s) 648
PmeI GTTTAAAC 1 cut(s) 613
PteI GCGCGC 1 cut(s) 100
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 3 cut(s) 108, 309, 612
SatI GCNGC 1 cut(s) 647
Sau3AI GATC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 27, 28
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 2 cut(s) 487, 633
SfcI CTRYAG 1 cut(s) 336
SmaI CCCGGG 1 cut(s) 28
Sse9I AATT 2 cut(s) 49, 109
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 452
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 25, 26
TaaI ACNGT 3 cut(s) 34, 279, 337
TaiI ACGT 1 cut(s) 595
TaqI TCGA 2 cut(s) 54, 244
TasI AATT 2 cut(s) 49, 109
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 3 cut(s) 108, 309, 612
Tru9I TTAA 3 cut(s) 108, 309, 612
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 56, 703
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 1 cut(s) 531
XapI RAATTY 1 cut(s) 49
XmaI CCCGGG 1 cut(s) 26
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.