Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

2096083 .. 2100498

Gene Structure 4416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGGTTGCGGTCTCTAGGAACTGCTTCATTATTAGCAGCTTGCCGTGGCAGTACTCGAAGAGGAAGAGCAACAGAGCAATATACCAAATGATGCACTCGGAGCACGATGACCTGGACCATAAGGCTGCCGGACTCCGGATTTGTTCAATTCTCAAGGTTGCTATGAGTGTCGATGATATTGTCACTTCTGGAGCCAAGCCATTATTTTTCCTTCATTACTTTGCTACAAGCTGCCTTGATGTTGATCTTGCTGAAAAGGTAGAGAATCATGAAAGAACATGGATGGTTGGATGGTTGGATGGAAAGGTTGACGCTTTGAAGTATCTTGTTTCACACTTCCAACTTTACCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

118

Amino Acids

13.64

Weight (kDa)

8.45

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	150, 322
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	42, 234
AluI	AGCT	2 cut(s)	42, 234
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	39, 128, 234
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AsiGI	ACCGGT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	51, 115, 221
BccI	CCATC	3 cut(s)	280, 288, 296
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	3 cut(s)	40, 129, 235
BlsI	GCNGC	3 cut(s)	41, 130, 236
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	2 cut(s)	138, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	291, 299, 307
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	51, 115, 221
BshTI	ACCGGT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	132, 139, 352
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	11
BspEI	TCCGGA	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	2 cut(s)	56, 62
BstC8I	GCNNGC	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	291, 299, 307
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	51, 115, 221
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	291, 299, 307
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	351
CviAII	CATG	2 cut(s)	272, 282
CviJI	RGCY	5 cut(s)	42, 128, 197, 202, 234
CviKI_1	RGCY	5 cut(s)	42, 128, 197, 202, 234
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	56, 62
EarI	CTCTTC	2 cut(s)	56, 62
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	275, 285
FaiI	YATR	5 cut(s)	85, 123, 167, 273, 283
FatI	CATG	2 cut(s)	271, 281
Fnu4HI	GCNGC	3 cut(s)	40, 129, 235
FokI	GGATG	3 cut(s)	298, 306, 314
Fsp4HI	GCNGC	3 cut(s)	40, 129, 235
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	3 cut(s)	40, 129, 235
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	3 cut(s)	132, 139, 352
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	275, 285
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	135, 268
HpaII	CCGG	3 cut(s)	132, 139, 352
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	3 cut(s)	139, 192, 272
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	275, 285
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	103, 194
LpnPI	CCDG	5 cut(s)	101, 128, 145, 152, 177
Lsp1109I	GCAGC	3 cut(s)	51, 115, 221
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	73, 79
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	271, 279
MnlI	CCTC	1 cut(s)	57
MroI	TCCGGA	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	3 cut(s)	132, 139, 352
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	275, 285
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	41, 130, 236
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	3 cut(s)	40, 129, 235
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	7 cut(s)	9, 44, 117, 162, 236, 264, 312
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	114
TaqI	TCGA	2 cut(s)	59, 174
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	39, 128, 234
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	17, 19, 206, 288
VpaK11BI	GGWCC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.