Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000516.1

Orthogroup ID

OG0000372

Physical Location & Seq

Genomic Coordinates Reverse (-)

78959 .. 85696

Gene Structure 6738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000516.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgggtactcttggatatgatcatactaaggttcgaccaattttcgaaaaggagatcggtggtcaacaatacaagctgatgttgaagcgtttaaatagaggtttggtgacccaattagggctctcggggtgctacaatgggttactggaagcgtcggccaccaaacttggattatcggccaatgcttatggtatcgggaccgactcgccggtaatcggattgctccagatcgttcaggtcgatccggcgtcgaccttgaaggagacgatgaaggttgcggttgctatgagtttcgatgacattgtcacttctggagccaagccattatttttccttgattactttgctacaagccgccttgatgttgatcttgctgaaaagttcttgaggtcatcgttgccggaggaggaggagagttcaactagaagaggaaagtggaaccagaagcgattcaaattttacttcaacaataaaacctgggcttaccttgatggtgaggtcgagagggagagcccaagagaaggagttgtgcttggaggctcgtcgtctcgccgagctcttaccggcctcgagaagcaccgatctcaactacagggcgcgatcaatgagcttgatctgatcggtgtcggagtcacgggagtcgaggatccacttgaaggagagatcgatggtgaagggcgacgagtcggaaaagtcgaggaaggtctcaaggagtcgcggccaaggaggttaggatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

246

Amino Acids

27.19

Weight (kDa)

6.78

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000372)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09000
rosa_chinensis	RchiOBHm_Chr1g0319921 RchiOBHm_Chr2g0124671 RchiOBHm_Chr3g0488631 RchiOBHm_Chr3g0495191 RchiOBHm_Chr5g0067451 RchiOBHm_Chr6g0269581 RchiOBHm_Chr7g0210411 RchiOBHm_Chr7g0212341 RchiOBHm_Chr7g0214191
rosa_laevigata	RLG00000003882 RLG00000008030 RLG00000011591 RLG00000016235 RLG00000018631 RLG00000031951 RLG00000032135 RLG00000032548 RLG00000033239
rosa_multiflora	Rmu_sc0000281.1_g000015 Rmu_sc0000516.1_g000020 Rmu_sc0000816.1_g000025 Rmu_sc0001850.1_g000002 Rmu_sc0003260.1_g000025 Rmu_sc0007581.1_g000007 Rmu_sc0009241.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218290 Rroxscaffold_3G00240930 Rroxscaffold_4G00300430 Rroxscaffold_5G00334810 Rroxscaffold_5G00360330 Rroxscaffold_7G00180190 Rroxscaffold_7G00192890
rosa_rugosa	Rorug01G0357800 Rorug01G0357900 Rorug03G0350400 Rorug05G0174000 Rorug05G0231100 Rorug05G0231100 Rorug05G0231200 Rorug05G0231200 Rorug05G0577100 Rorug07G0029800 Rorug07G0029900 Rorug07G0146200
rosa_samantha	Rh1AG039300 Rh1AG155100 Rh1AG173000 Rh1AG200900 Rh1AG276400 Rh1BG055400 Rh1BG111700 Rh1CG081000 Rh1CG161100 Rh1CG161200 Rh1CG247000 Rh1CG264000 Rh1DG031600 Rh1DG163400 Rh2AG236000 Rh2AG236100 Rh2AG277400 Rh2AG277500 Rh2AG309700 Rh2AG339600 Rh2BG221000 Rh2DG243300 Rh2DG243400 Rh2DG267900 Rh2DG434000 Rh3AG280300 Rh3AG288700 Rh3CG224100 Rh4AG043200 Rh4AG260400 Rh4BG266100 Rh4CG071300 Rh4DG155900 Rh5AG213100 Rh5AG238500 Rh5AG238600 Rh5AG296300 Rh5AG463800 Rh5CG236400 Rh5CG269500 Rh5CG269600 Rh5DG131600 Rh6AG074700 Rh6AG077500 Rh6AG093000 Rh6AG286000 Rh6CG246600 Rh7AG171100 Rh7AG303600 Rh7AG389400 Rh7AG390000 Rh7AG446200 Rh7CG251500 Rh7CG408700 Rh7DG385600
rosa_wichuraiana	Rw0G014360 Rw0G015950 Rw2G017860 Rw2G027110 Rw4G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	2 cut(s)	599, 718
AciI	CCGC	3 cut(s)	278, 355, 718
AclWI	GGATC	3 cut(s)	236, 641, 654
AcoI	YGGCCR	3 cut(s)	156, 177, 719
AcsI	RAATTY	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	117, 215, 521, 656
AgsI	TTSAA	6 cut(s)	85, 259, 420, 454, 466, 656
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	76, 557, 610
AluI	AGCT	3 cut(s)	76, 557, 610
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	3 cut(s)	257, 552, 710
AlwI	GGATC	3 cut(s)	236, 641, 654
Ama87I	CYCGRG	2 cut(s)	124, 569
AoxI	GGCC	4 cut(s)	156, 177, 565, 719
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	118, 506, 683
AsuII	TTCGAA	1 cut(s)	45
AvaI	CYCGRG	2 cut(s)	124, 569
AvaII	GGWCC	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	646
BanII	GRGCYC	3 cut(s)	123, 515, 559
Bbv12I	GWGCWC	1 cut(s)	559
BccI	CCATC	3 cut(s)	485, 662, 729
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	257, 552, 710
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	590
BisI	GCNGC	2 cut(s)	355, 719
BlsI	GCNGC	2 cut(s)	356, 720
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	2 cut(s)	124, 569
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	4 cut(s)	199, 316, 440, 648
BmrFI	CCNGG	1 cut(s)	478
BpmI	CTGGAG	2 cut(s)	209, 333
Bpu14I	TTCGAA	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	406, 692
Bsa29I	ATCGAT	1 cut(s)	666
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	477, 722
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 215, 521, 656
Bse118I	RCCGGY	2 cut(s)	208, 563
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	478
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	477, 722
BseGI	GGATG	1 cut(s)	740
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	117, 215, 521, 656
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	3 cut(s)	419, 422, 425
Bsh1236I	CGCG	2 cut(s)	599, 718
BshFI	GGCC	4 cut(s)	158, 179, 567, 721
BshVI	ATCGAT	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	2 cut(s)	124, 569
BsiSI	CCGG	4 cut(s)	209, 245, 401, 564
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	4 cut(s)	117, 215, 521, 656
BsmAI	GTCTC	3 cut(s)	257, 552, 710
BsmBI	CGTCTC	2 cut(s)	257, 552
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	4 cut(s)	158, 179, 567, 721
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	2 cut(s)	124, 569
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	3 cut(s)	123, 515, 559
BspACI	CCGC	3 cut(s)	278, 355, 718
BspANI	GGCC	4 cut(s)	158, 179, 567, 721
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	2 cut(s)	599, 718
BspLI	GGNNCC	4 cut(s)	199, 316, 440, 648
BspPI	GGATC	3 cut(s)	236, 641, 654
BspT104I	TTCGAA	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	710
BsrFI	RCCGGY	2 cut(s)	208, 563
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	2 cut(s)	208, 563
BssECI	CCNNGG	2 cut(s)	477, 722
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	740
BstFNI	CGCG	2 cut(s)	599, 718
BstHHI	GCGC	1 cut(s)	599
BstMAI	GTCTC	3 cut(s)	257, 552, 710
BstNI	CCWGG	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	590
BstUI	CGCG	2 cut(s)	599, 718
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	4 cut(s)	158, 179, 567, 721
BsuTUI	ATCGAT	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	740
CfoI	GCGC	1 cut(s)	599
Cfr10I	RCCGGY	2 cut(s)	208, 563
Cfr13I	GGNCC	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	2 cut(s)	141, 237
Csp6I	GTAC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	27
DraI	TTTAAA	1 cut(s)	93
EaeI	YGGCCR	3 cut(s)	156, 177, 719
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	722
Eco24I	GRGCYC	3 cut(s)	123, 515, 559
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	557
Eco88I	CYCGRG	2 cut(s)	124, 569
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	722
EcoT38I	GRGCYC	3 cut(s)	123, 515, 559
ErhI	CCWWGG	1 cut(s)	722
Esp3I	CGTCTC	2 cut(s)	257, 552
FaiI	YATR	4 cut(s)	18, 24, 189, 287
FaqI	GGGAC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	2 cut(s)	355, 719
FriOI	GRGCYC	3 cut(s)	123, 515, 559
Fsp4HI	GCNGC	2 cut(s)	355, 719
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	2 cut(s)	355, 719
GsuI	CTGGAG	2 cut(s)	209, 333
HaeIII	GGCC	4 cut(s)	158, 179, 567, 721
HapII	CCGG	4 cut(s)	209, 245, 401, 564
HgaI	GACGC	2 cut(s)	141, 237
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	2 cut(s)	65, 252
HindII	GTYRAC	2 cut(s)	65, 252
HinfI	GANTC	6 cut(s)	203, 450, 630, 639, 684, 713
HpaII	CCGG	4 cut(s)	209, 245, 401, 564
HphI	GGTGA	3 cut(s)	118, 506, 683
Hpy166II	GTNNAC	2 cut(s)	65, 252
Hpy188I	TCNGA	4 cut(s)	218, 618, 629, 689
Hpy188III	TCNNGA	6 cut(s)	196, 226, 312, 385, 502, 571
Hpy8I	GTNNAC	2 cut(s)	65, 252
Hpy99I	CGWCG	4 cut(s)	157, 253, 547, 684
HpyAV	CCTTC	6 cut(s)	253, 265, 515, 650, 668, 695
HpyF3I	CTNAG	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	248
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	228, 314
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	4 cut(s)	106, 141, 304, 631
MboII	GAAGA	1 cut(s)	438
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	3 cut(s)	123, 515, 559
MluCI	AATT	3 cut(s)	39, 113, 455
MlyI	GAGTC	5 cut(s)	197, 639, 648, 693, 722
MmeI	TCCRAC	2 cut(s)	607, 667
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	92
MspI	CCGG	4 cut(s)	209, 245, 401, 564
MspR9I	CCNGG	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	2 cut(s)	599, 718
NlaIV	GGNNCC	4 cut(s)	199, 316, 440, 648
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	3 cut(s)	106, 304, 631
NspV	TTCGAA	1 cut(s)	45
PaeR7I	CTCGAG	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 693
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	450
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	356, 720
PleI	GAGTC	5 cut(s)	197, 638, 647, 692, 721
PpsI	GAGTC	5 cut(s)	197, 638, 647, 692, 721
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	476
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	4 cut(s)	199, 316, 440, 648
PspPI	GGNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	646
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SacI	GAGCTC	1 cut(s)	559
SalI	GTCGAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	355, 719
Sau96I	GGNCC	1 cut(s)	198
SchI	GAGTC	5 cut(s)	197, 639, 648, 693, 722
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	3 cut(s)	123, 515, 559
SfcI	CTRYAG	1 cut(s)	590
Sfr274I	CTCGAG	1 cut(s)	569
SfuI	TTCGAA	1 cut(s)	45
SinI	GGWCC	1 cut(s)	198
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	385, 569, 707
SmoI	CTYRAG	3 cut(s)	385, 569, 707
Sse9I	AATT	3 cut(s)	39, 113, 455
SsiI	CCGC	3 cut(s)	278, 355, 718
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	722
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	39, 113, 455
TauI	GCSGC	2 cut(s)	357, 721
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	3 cut(s)	106, 304, 631
Tsp45I	GTSAC	3 cut(s)	106, 304, 631
TspDTI	ATGAA	1 cut(s)	284
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	455
XhoI	CTCGAG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.